View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_20 (Length: 496)
Name: NF17166_low_20
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Complemental strand, 4286015 - 4285536
Alignment:
| Q |
1 |
agagagaaatagaggagccggaaggaagagagcgcagttacatacaaacaatacctaacattttgactagttacacctaatattatctttggttacaccc |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||| |||||||| |
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| T |
4286015 |
agagagaaatagcggagccggaaggaagagagcgcagttacatacaa----tacctaacatttttactagttacacctaatattttctttgattacaccc |
4285920 |
T |
|
| Q |
101 |
ctacgcgtcccggttagtacctcaatagc---gtcattgtcccaatcgctaagattttgatgtcaaaatgaaaataattttgacaaattaaaaagcttgc |
197 |
Q |
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||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4285919 |
ctacgcgtcccaattagtacctcaatagctgcgtcattgtcccaatcgccaagattttgatgtcaaaatgaaaatagttttgacaaattaaaaagcttgc |
4285820 |
T |
|
| Q |
198 |
ttaataggagacgtttttgggtctcaaaaagcaagtaatgtttgttcgatgttgtcctcggtggtttttagaagatggttagaaaaattcaactcgagtt |
297 |
Q |
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|||||||||| | ||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4285819 |
ttaataggagtcatttttgggtttcaaaaattaagtaatgtttgttcgatgttgtcctcgatggtttttagaagatggttagaaaaattcaactcgagtt |
4285720 |
T |
|
| Q |
298 |
gtgtgtaagtaatgatagaatttgagtttcgtttgattagttgcttagcacaataaatgctcattgtatagttacgagtatctactctgagacggtgaga |
397 |
Q |
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|||| || ||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
4285719 |
gtgt--aactaatgatagaacttgaatttcgtttgattagttgcttagcataataaatgctcattgtatagttacgagtgtctactctgagacaatgaga |
4285622 |
T |
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| Q |
398 |
aagaattgtgaaagccagatttattatgagaggtttaattgaagataataaagttgtgaatttgaaaagtagatgattttatggat |
483 |
Q |
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| T |
4285621 |
aagaattgtgaaagccaaatttattatgataggtttaattgaagataataaagttgtgaatttgaaaagtagatgattttatggat |
4285536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 4242805 - 4242550
Alignment:
| Q |
1 |
agagagaaatagaggagccggaaggaagagagcgcagttacatacaaacaatacctaacattttgactagttacacctaatattatctttggttacaccc |
100 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| | |||||||||| |||||||| |
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| T |
4242805 |
agagagaaatagcggagccggaaggaagagagcccagttacatacaaacaatacctaacatttttactagttacaccttaaattatctttgattacaccc |
4242706 |
T |
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| Q |
101 |
ctacgcgtcccggttagtacctcaatagc---gtcattgtcccaatcgctaagattttgatgtcaaaatgaaaataattttgacaaattaaaaagcttgc |
197 |
Q |
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|||||||||||| ||||||||| |||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4242705 |
ctacgcgtcccgattagtacctaaatagctgcgttattgtcccaatcgccaagattttgatgtcaaaatgaaaatagttttgacaaattaaaaagcttgc |
4242606 |
T |
|
| Q |
198 |
ttaataggagacgtttttgggtctcaaaaagcaagtaatgtttgttcgatgttgtc |
253 |
Q |
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|||||||||| |||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
4242605 |
ttaataggagtcgtttttgtgtttcaaaaagcaagtaatgtttgttcgatgttgtc |
4242550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 426 - 483
Target Start/End: Complemental strand, 4242487 - 4242430
Alignment:
| Q |
426 |
agaggtttaattgaagataataaagttgtgaatttgaaaagtagatgattttatggat |
483 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
4242487 |
agaggtttaattgaagataataaaattgtgaatttgaaaagtagattattttatggat |
4242430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 381
Target Start/End: Complemental strand, 4242549 - 4242487
Alignment:
| Q |
319 |
ttgagtttcgtttgattagttgcttagcacaataaatgctcattgtatagttacgagtatcta |
381 |
Q |
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||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| |||| |
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| T |
4242549 |
ttgagtttcttttgattagttgcttagcacaataaatgattattgtatagttacgagtgtcta |
4242487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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