View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_21 (Length: 479)
Name: NF17166_low_21
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 21 - 462
Target Start/End: Original strand, 7117713 - 7118161
Alignment:
| Q |
21 |
tgaagaacgtgaaacgattattaaccctagtaaaatgaacaattatatatagctgctgtcatgggattgt------aaacaagtttgctgtattcaccat |
114 |
Q |
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| T |
7117713 |
tgaagaacgtgaaacgattattaaccctagtaaaatgaacaattatatatagctgctgtcatgggatagtcatagtaaacaagtttgctgtattcaccat |
7117812 |
T |
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| Q |
115 |
gccnnnnnnncatttaatagcgttgccatgtgnnnnnnntcatgattgaaagctatgttttgggttttttgctttcatgttgttatgatcgctgtcactg |
214 |
Q |
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| T |
7117813 |
gccaaaaaaacatttaatagcgttgccatgtgaaaaaaatcatgattgaaagctatcttttgggtttcttgctttcatgttgttatgattgctgtcactg |
7117912 |
T |
|
| Q |
215 |
tcatacatcaaaa-gccatgttaaaccatataggtatactatattagtatgtgtatccagttttattcnnnnnnngtcgattgtttcaggggccatatgt |
313 |
Q |
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| T |
7117913 |
tcatacatcaaaaagccatgttaaaccatataggtatactatatcagtatgtgtatccagttttattcaaaaaaagtcgattgtttcaggtgccatatgt |
7118012 |
T |
|
| Q |
314 |
ttaaaaatcaagtcatattgaatggcaacttatagttgaacattataaagagaactacttttgggtactgtccatttaattaattagttagctagaacca |
413 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| |
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| T |
7118013 |
ttaaaaatcaagtcatattgaatggcaacttgtagttgaacattataaagagaactaattctgggtactgtccatttaattaattagttagctcgaacca |
7118112 |
T |
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| Q |
414 |
tgacaataaaatatttgattgtttctattgctctacatgaaatatttat |
462 |
Q |
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| T |
7118113 |
tgacaataaaatatttgattgtttctattgctctacatgaaatatttat |
7118161 |
T |
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