View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_24 (Length: 469)
Name: NF17166_low_24
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 7194812 - 7195250
Alignment:
| Q |
13 |
ttctaagctactaaatatgtgtagtaataaattaaagccactatagtcattattgtttttatgagtggcagtggagtgttttttgtgtgaag-------- |
104 |
Q |
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| T |
7194812 |
ttctaagctactaaatatgtgtagtaataaattaaagccactatagtcattattgtttttatgagtggcagtggagtgttttttgtgtgaagaagaagaa |
7194911 |
T |
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| Q |
105 |
-aagaagaagcagcaaagtaactaagtaagtaacatggttagaagtcctaaggaggttaataaaggtgcttggtctcgtgaagaagatgatatcctctcc |
203 |
Q |
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| T |
7194912 |
gaagaagaagaagcaaagtaactaagtaagtaacatggttagaagtcctaaggaggttaataaaggtgcttggtctcgtgaagaagatgatatcctctcc |
7195011 |
T |
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| Q |
204 |
aaatatgttgtcattcatggagaaggaaaatggcaaaaggttgcccaaaatgcaggtgctaaattaattactgattttctctaatgcacaactatattat |
303 |
Q |
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| T |
7195012 |
aaatatgttgtcattcatggagaaggaaaatggcaaaaggttgcccaaaatgcaggtgctaaattaattactgattttctctaatgcacaactatattat |
7195111 |
T |
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| Q |
304 |
aggttgccattcaatgtgttttcatgagacttgtatcctttgctgtctctccaaacaaatctaaacaaatcttgatagttggatttatttgaatggccga |
403 |
Q |
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| T |
7195112 |
a-gttgccattcaatgtgttttcatgagacttgtatcctttcctgtctctcc----------aaacaaatcttgatagttggattaatttgaatggccga |
7195200 |
T |
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| Q |
404 |
gaggtttgtctagagagaccgtagaggatacaagattgttccatgcatgt |
453 |
Q |
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| T |
7195201 |
gaggtttgtctagagagactgtagaggatacaagattgttccatgcatgt |
7195250 |
T |
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