View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_25 (Length: 469)
Name: NF17166_low_25
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Complemental strand, 37585570 - 37585123
Alignment:
| Q |
16 |
aaatgcagaagcaaagccccttgatcacgagctttgttacaaacaataaaaagaatccaaatcttatcgattgaattcaatgtacaagtattaatgtgat |
115 |
Q |
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| T |
37585570 |
aaatgcagaagcaaagccccttgatcacgagctttgttacaaacaataaaaagaatccaaatcttatcgattgaattcaatgtacaagtattaatgtgat |
37585471 |
T |
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| Q |
116 |
ggcataggctaaacgtaatcagaaaatcaagttttagccaactagtaagaacgaatctttgcaaatttgtttaagtgatcatggatatcattgcaattcc |
215 |
Q |
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| T |
37585470 |
gtcataggctaaacgtaatcagaaaatcaagttttagccaactagtaagaacgaatctttgcaaatttgtttaagtgatcatggatatcattgcaattcc |
37585371 |
T |
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| Q |
216 |
aattgattaaagattttgctacaagccagccaactttaaaattaacaagaaacatgttaaaattagtcattacaaacccgagttgattcatagcaaaatt |
315 |
Q |
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| T |
37585370 |
aattgattaaagattttgctacaagccaaccaactttaaaattaacaagaaacatgttaaaattagtcattacaaacccgagttgattcatagcaaaatt |
37585271 |
T |
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| Q |
316 |
gatgcactaaaatagccaagaaacattttaactgatttgtg---------taatgggactcatatttgatgaacaaaccaaactctttgacagatctttt |
406 |
Q |
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| T |
37585270 |
gatgcactaaaatagccaagaaacattttaactgatttgtgtaatttgtgtaatgggactcatatttgatgaacaaaccaaactctttgacatatctttt |
37585171 |
T |
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| Q |
407 |
tccctcctaaaagaaaccctctggtttattgaattacaatagtgccct |
454 |
Q |
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| T |
37585170 |
tccctcctaaaagaaaccctctggtttattggattacaatagtgccct |
37585123 |
T |
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