View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_27 (Length: 439)
Name: NF17166_low_27
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 42362121 - 42361735
Alignment:
| Q |
16 |
caaaagcaatatcaccaagtgcttggaacactaaccataacttgtctgcaatatttgaagctggtactccagctacactccccataattcttccattttc |
115 |
Q |
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| T |
42362121 |
caaaagcaatatcaccaagtgcttggaacactaaccataacttgtctgcaatatttgaagctggtactccagctacactccccataattcttccattttc |
42362022 |
T |
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| Q |
116 |
tacaagtttaaccatgagtcttaggagccattgccttgttggagggactaacttgattggagttctttaattcaagggaatactttgctatttcgtaaat |
215 |
Q |
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| T |
42362021 |
tacaagtttaaccatgagtcttaggagccattgccttgttggagggactaacttgattggagttctttaattcaagggaatactttgctatttcgtaaat |
42361922 |
T |
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| Q |
216 |
tcgatgactaaattcatcgacgcttacgtactgaaatgctgatttactctattctagacttactaatgcatcatcttgatgcggctaaaacaa--nnnnn |
313 |
Q |
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| T |
42361921 |
ttgatgactaaattcattgacgcttacatactgaaatgctgatttactctattctagacttactaatgcatcatcttgatgcggctaaaacaattttttt |
42361822 |
T |
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| Q |
314 |
nncttcatattatttgctctaatgatcataaggcttaacttgataagaaaacagaaccttaataaatcaaaataaaccttacctata |
400 |
Q |
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| T |
42361821 |
ttcctcatattatttgctctaatgatcataaggcttaacttgataagaaaacataaccttaataaatcaaaataaaccttacctata |
42361735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 14013916 - 14013857
Alignment:
| Q |
157 |
gagggactaacttgattggagttctttaattcaagggaatactttgctatttcgtaaatt |
216 |
Q |
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| T |
14013916 |
gagggactaaattgattggtgttctttaatttaagggattattttgctatttcataaatt |
14013857 |
T |
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