View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_29 (Length: 434)
Name: NF17166_low_29
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_29 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 16953679 - 16954112
Alignment:
| Q |
1 |
aaccacacatgtacccatctaatacattattgtcactattatcaattttccctaacgaactttattttaagtaccctctctccccaaacattgatctcat |
100 |
Q |
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| T |
16953679 |
aaccacacatgtacccatctaatacattattgtcactattatcaattttccctaacgaactttattttaagtaccctctctccccaaacattgatctcat |
16953778 |
T |
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| Q |
101 |
acaaattatgttttaacaaaacaaagtcttctaatataaacttaatcatctcaaaaatcttagcattcatcagaagaacatccattaagtaagccagaag |
200 |
Q |
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| T |
16953779 |
acaaattatgttttaacaaaacaaagtcttctaatataaacttaatcatctcaaaaatcttagcattcatcagaagaacatccattaagtaagccagaag |
16953878 |
T |
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| Q |
201 |
ataaagccatgagtagaatagcagcctccttcacatcttgagggaaaacttgatgggaagccaagttgttgctccaacttgttatcaaatcttcaaaatt |
300 |
Q |
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| T |
16953879 |
ataaagccatgagtagaatagcagcctccttcacatcttgagggaaaacttgatgggaagccaagttgttgctccaacttgttatcaaatcttcaaaatt |
16953978 |
T |
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| Q |
301 |
attacacttgttttcacttttacccttccttttcaatagttgtgcacattgatcagtttttgaccttttccttttgatttgcaacttctttcccttcaca |
400 |
Q |
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| T |
16953979 |
attacacttgttttcacttttacccttccttttcaatagttgtgcacattgatcagtttttgaccttttccttttgatttgcaacttctttcccttcaca |
16954078 |
T |
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| Q |
401 |
tatggtttctctgccaccacaagagtctcaccat |
434 |
Q |
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| T |
16954079 |
tatggtttctctgccaccacaagagtctcaccat |
16954112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 358 - 434
Target Start/End: Original strand, 17023627 - 17023703
Alignment:
| Q |
358 |
ttttgaccttttccttttgatttgcaacttctttcccttcacatatggtttctctgccaccacaagagtctcaccat |
434 |
Q |
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| T |
17023627 |
ttttgaccttttccttttgatttgcaacttctttcccttcacatatggtttctctgccaccacaagagtctcaccat |
17023703 |
T |
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