View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17166_low_30 (Length: 429)
Name: NF17166_low_30
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_30 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 129 - 391
Target Start/End: Original strand, 16440494 - 16440751
Alignment:
| Q |
129 |
ttggtgaaccggtgtgagttcattatttagtagtagttaagtctggggaagactttgtgggatttaatatcagatttcagatttttgttagggaagattt |
228 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||||||||||| | |||||||||||||| |||| || || || |||||||||||||| || |
|
|
| T |
16440494 |
ttggtgaactggtgtgaattcattatttattagtagttaagttttgggaagactttgtgatattttat--------tcccatctttgttagggaagagtt |
16440585 |
T |
|
| Q |
229 |
tttccgtaatcggtatggtcttttttaatttccgatttcattgaactttgcttcagttttgttcatgtcttccttcaccttttctatggtttcccatgct |
328 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| ||| || || ||||||| |||||| ||| | |
|
|
| T |
16440586 |
ttttcgtaatcggtatggtcttttttaatttcagatttcgtttaactttgcttcagttttgttcatgtcctccctcgccatttctattgtttcctatgat |
16440685 |
T |
|
| Q |
329 |
ttttaaaattatatttgtattg---cttcaaatgattcataggttggtctcag-gtttgcaacctat |
391 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||| |||||||| ||||||||| |||||||||||| |
|
|
| T |
16440686 |
tttttaaattatatttctattgcttcttcaaatggttcatagg-tggtctcagtttttgcaacctat |
16440751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 16440118 - 16440179
Alignment:
| Q |
22 |
aaacgcgctagaaaagcagtctctaagaatcaagttaaagagcaacagctagcccaaaagaa |
83 |
Q |
| |
|
||||| |||||||||| |||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
16440118 |
aaacgtgctagaaaagaagtctctacaaatcaagttaaagagcaagagctagcccaaaagaa |
16440179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 16440202 - 16440245
Alignment:
| Q |
79 |
aagaatcaagttagagtgcaacaccgtgacgaaaaacaacctca |
122 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||||||||||||| |
|
|
| T |
16440202 |
aagaatccatttagagtgcaacaccgtgaagaaaaacaacctca |
16440245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 24077449 - 24077387
Alignment:
| Q |
21 |
gaaacgcgctagaaaagcagtctctaagaatcaagttaaagagcaacagctagcccaaaagaa |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24077449 |
gaaacgcgctagaaaagcagtctctaagaatcaagttaaagagcaacagcttgcccaaaagaa |
24077387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 24077140 - 24077068
Alignment:
| Q |
317 |
gtttcccatgctttttaaaattatatttgtattgcttcaaatgattcataggttggtctcaggtttgcaacctatttga |
395 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24077140 |
gtttcccatgctttttaaa------tttgtattgcttcaaatgattcataggtaggtctcaggtttgcaacctatttga |
24077068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 24077365 - 24077321
Alignment:
| Q |
78 |
aaagaatcaagttagagtgcaacaccgtgacgaaaaacaacctca |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24077365 |
aaagaatcaagttagagtgcaacaccgtgaagaaaaacaacctca |
24077321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 291
Target Start/End: Complemental strand, 24077189 - 24077138
Alignment:
| Q |
240 |
ggtatggtcttttttaatttccgatttcattgaactttgcttcagttttgtt |
291 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
24077189 |
ggtatggtcttttttaatttcagatttcattgatttttgcttcagttttgtt |
24077138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University