View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_32 (Length: 425)
Name: NF17166_low_32
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 169 - 407
Target Start/End: Complemental strand, 8825742 - 8825502
Alignment:
| Q |
169 |
ttcagatttgagagagttcaataaaagactaagagaaaaaatgatattttttctgaataagaaaagaaaccacaaagcacaaacgattgtattatatttg |
268 |
Q |
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| T |
8825742 |
ttcagatttgagagagttcaataaaagactaagagaaaaaatgatattttttctgaataggaaaagaaaccacaaagcacaaacgattgtattatatttg |
8825643 |
T |
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| Q |
269 |
tacggtaaaacttcat--acatcttgtcgtttacataactattttcgcatagcttgctgagttatttatgtgcagcaaattctatgaatgccttcaatta |
366 |
Q |
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| T |
8825642 |
tacggtaaaacttcatgtacatcttgtcgtttacataactattttcgcatagcttgctgagttatttatgtgcagcaaattctatgaatgccttcaatta |
8825543 |
T |
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| Q |
367 |
ttgcagcccatacaaccatcttctcccttggtagcagaatc |
407 |
Q |
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| T |
8825542 |
ttgcagcccatacaaccatcttctcccttggtagcagaatc |
8825502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 8825924 - 8825767
Alignment:
| Q |
13 |
aatatcgatgatagtgattgtaaagacaaactcaattctaacaaatttattatcaattatag--tgtaattttcagagccacacattaattgtcaatcac |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
8825924 |
aatatcgatgatagtgattgtaaagacaaactcaattctaacaaatttattatcaattatagagtgtaattttcagagccacacattaattgtcaatcac |
8825825 |
T |
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| Q |
111 |
atgcataatgagaaaaacggattatcaataaattgacttgtgtttagtaatagtttgc |
168 |
Q |
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| T |
8825824 |
atgcataatgagaaaaacggattatcaataaattgacttgtgtttagtaatagtttgc |
8825767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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