View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_33 (Length: 418)
Name: NF17166_low_33
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 410
Target Start/End: Original strand, 31246204 - 31246597
Alignment:
| Q |
18 |
cacaaatgggtcgccttaaattgctcatcctgtggaatttgaatttttcaggaaatctcaattttctttctagtcatttggggtatctctgttgggataa |
117 |
Q |
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| T |
31246204 |
cacaaatgagtcgccttaaattgctcatgctgtggaatttgaatttctcaggaagtctcaattttctttctagtcatttggggtatctctgttgggataa |
31246303 |
T |
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| Q |
118 |
atatcctttcacttgtttgccatcaagttttcagccggataatcttgttgaactgatactacctcgtagcaacatcaggcaactatgggagggcacaaag |
217 |
Q |
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| T |
31246304 |
atatcctttcacttgtttgccatcaagtttccagccggataaacttgttgaactggtcctacctcgtagcaacatcaggcaactatgggagggcacaaag |
31246403 |
T |
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| Q |
218 |
gtactataaacatggttatgagcctttgtttttctttttctgatgaacacataagaagtgtttatctcttaatattccttctttcactacagtttgttaa |
317 |
Q |
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| T |
31246404 |
gtaatataaacatggttatgagcctttgtttatctttttctgatgaacacataagaagtgtttatctcttaatattccttctttcactacagttagttaa |
31246503 |
T |
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| Q |
318 |
ataaatgaattaaagtttaaatatgattattaatttttctcttt-catttatcattgtctgcagcctctacataatttgacacatattcatctc |
410 |
Q |
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| T |
31246504 |
ataaatgaattaaagtttaaatatgattattaatttttctctttccatttatcattgtctgcagtgtttacataatttgacacatattgatctc |
31246597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 28 - 223
Target Start/End: Original strand, 13610268 - 13610463
Alignment:
| Q |
28 |
tcgccttaaattgctcatcctgtggaatttgaatttttcaggaaatctcaattttctttctagtcatttggggtatctctgttgggataaatatcctttc |
127 |
Q |
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| T |
13610268 |
tcgccttaaattgctcaagctgcgtgatttgaatttctcaggaagtctcaattttctttcaagtgaattggggtatctatattgggaaaaatatcctttc |
13610367 |
T |
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| Q |
128 |
acttgtttgccatcaagttttcagccggataatcttgttgaactgatactacctcgtagcaacatcaggcaactatgggagggcacaaaggtacta |
223 |
Q |
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| T |
13610368 |
acatgtttgccatcaagttttcagccggataaacttgttgaattgatcctacgttctagcaacatcaggcaactatggaagggaacaaaggtacta |
13610463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 410
Target Start/End: Original strand, 13614278 - 13614364
Alignment:
| Q |
325 |
aattaaagtttaaatatgattattaatttttctctttc-atttatcattgtctgcagcctctacataatttgacacatattcatctc |
410 |
Q |
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| T |
13614278 |
aattaatgcttaaatatgattattaacctttctctttctactgaccattgtctgcagcctcttcacaatttgacacatattgatctc |
13614364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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