View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_35 (Length: 415)
Name: NF17166_low_35
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 31120425 - 31120820
Alignment:
| Q |
1 |
gtatcattactcttatagctagttaacatgttactaatcatatactgtcgctatcttggaactttagggtggatggagagattcaacaaggcacgacatg |
100 |
Q |
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| T |
31120425 |
gtatcattactcttatagctagttgacatgttactaatcatatactgtcactgtcttggaactttagggtggatggagagattcaacaaggcacgacatg |
31120524 |
T |
|
| Q |
101 |
ggatccaatacttatggagcaccaggttcgttaaacatatactagtttgacatggagagtacaaaatatatatgccatcttgagttaattccaacctcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31120525 |
ggatccaatacttatggagcaccaggttcgttaaacatatactagtttgacatggagagtacaaaatatatatgccatcttgagttaattccaacctcaa |
31120624 |
T |
|
| Q |
201 |
aacttgtctacataaaggaaacatatcactttttaatgtctagatttatatagtaaagtttcagtttggattctttcaggaaattactcaaacaaaggtg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31120625 |
aacttgtctacataaaggaaacatatcactttttaatgtctagatttatatagtaaagtttcaatttggattctttcaggaaattactcaaacaaaggtg |
31120724 |
T |
|
| Q |
301 |
gaaatagcgctaacaagaataccggtagtgataccacctattatcagaatgagacagttgagcccagtaattactatagctcatcaatctattatg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||| |
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| T |
31120725 |
gaaatagcgctaacaagaataccggtagtgataccacctattatcagaatgagacagtggagcccagtaattactacagttcctcaatctattatg |
31120820 |
T |
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