View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_36 (Length: 412)
Name: NF17166_low_36
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 25 - 396
Target Start/End: Original strand, 43036922 - 43037295
Alignment:
| Q |
25 |
tgtacgaaaatgaaatattggtggtgtgtggtgagtgccagttttcatggttcattcattcaattgaacagaaaaaggaaagaaaacaacagaaagtgat |
124 |
Q |
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| T |
43036922 |
tgtacgaaaatgaaatattggtggtgtgtggtcagtgccagttttcatggttcattcattcaattgaacagaaaaaggaaagaaaacaacagaaagtgat |
43037021 |
T |
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| Q |
125 |
gatgtctgccaacgaggaaagaaacatgaaaatgaaataatttagttgaaggaggatctcccacccaccaataattttgcaaaatatccaaacacaaata |
224 |
Q |
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| T |
43037022 |
gatgtctgccaacgaggaaagaaacatgaaaatgaaataatttagttgaaggaggacctcccacccaccaataattttgcaaaatatccaaacacaaata |
43037121 |
T |
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| Q |
225 |
cagtagatactttcatttcatgcagtcatggtattttaatcagatgg--tataatctttatattttaattttaaaataccgaactaaacttgtttaagca |
322 |
Q |
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| T |
43037122 |
cagtagatactttcatttcatgcagtcatggtattttaatcagatggtatataatctttagattttaattttaaaataccgaactaaacttgtttaagca |
43037221 |
T |
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| Q |
323 |
aattaaaatgaaagaatgacttactgggaatggggtttgtaattgcgatcgacactgaacttgcagctaaaaat |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43037222 |
aattaaaatgaaagaatgacttactgggaatggggtttgtaattgcgatcgacactgaacttgcagctaaaaat |
43037295 |
T |
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