View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_38 (Length: 394)
Name: NF17166_low_38
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 181 - 341
Target Start/End: Original strand, 8174717 - 8174878
Alignment:
| Q |
181 |
aaataagcaaagcacttaacaaaattcactcctaactagacaacttttctataatcattgttcgcaacaagcaagaacaactcagtttcaataagtctag |
280 |
Q |
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| T |
8174717 |
aaataagcaaagcacttaacaaaattcactcctaaatagacaacttttctataatcattgttcgcaacaagcaagaacaactcagtttcaataagtctag |
8174816 |
T |
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| Q |
281 |
gcttgttaaccttgatccatcaactttgtaagagtcatccaagccaa-tcatccataattga |
341 |
Q |
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| T |
8174817 |
gcttgttaaccttgatccatcaactttgcaagagtcatccaagccaatttatccataattga |
8174878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 8173154 - 8173341
Alignment:
| Q |
1 |
ggctcatgatgccataacaaa-----caaatagaagtgtgagaatagattgagaaaaaatatttgaacaatgagcgacaatattttgatttctcatctaa |
95 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
8173154 |
ggctcatgatgccataacaaattaaacaaatagaagtgtgagaatagattgagaaaaaatatttgaacgatgagcgataatattttgatttctcatctaa |
8173253 |
T |
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| Q |
96 |
gtgatatgtggcatcatatatgtatttaaagtgatta-tttatagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
182 |
Q |
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| T |
8173254 |
gtgatatgtggcatcatatatgtatttaaaggggttattttttagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
8173341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 48775334 - 48775276
Alignment:
| Q |
124 |
aagtgattatttatagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
182 |
Q |
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| T |
48775334 |
aagtgattatttttagattcagcttattcgaacaacacaaacgagaagttgaccattaa |
48775276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 30534595 - 30534543
Alignment:
| Q |
123 |
aaagtgattatttatagattatgcttatttgaacaacgcacatgagaagttga |
175 |
Q |
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||||||||||||| ||||||||||||||||||| |||||| |||||||||||| |
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| T |
30534595 |
aaagtgattatttttagattatgcttatttgaataacgcaaatgagaagttga |
30534543 |
T |
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