View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_39 (Length: 388)
Name: NF17166_low_39
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 370
Target Start/End: Original strand, 51352185 - 51352548
Alignment:
| Q |
11 |
cagagaccgaaatatagatattttatgcaaatctgtaatattcattcatattcaatt-gtgagctaccccctctcaagtgtagactcaattgtctacaca |
109 |
Q |
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| T |
51352185 |
cagagatcgagatatagatattttatgcaaatccgtaatattcattcatattcaatttgtgagctaccccctctcaagtgtagactcaattgtctacaca |
51352284 |
T |
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| Q |
110 |
ttaaaattgcgtaaccccgttgtagttgttcaggaacttcatcaacgtcctcaggcctgtaacaacaacaacaaaatgaatcattcatccaatattaaaa |
209 |
Q |
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| T |
51352285 |
ttaaaattgcgtaaccccgttgtagttgttcaggaacttcatcaacgtcctcaggcctgtaacaacaacaacaaaatgaatcattcatccaatattaaaa |
51352384 |
T |
|
| Q |
210 |
tttaaaaacgctgttactttacttacaaataatctcccatgaaaaa---gataaatgttaatacgggaagaggtgtagatgatagtcattggaacactat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51352385 |
tttaaaaacgctgttactttacttacaaataatctcccatgaaaaagatgataaatgttaatacgggaagaggtgtagatgatagtcattggaacactat |
51352484 |
T |
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| Q |
307 |
ctggtcgcagatgtctgcagcactgtaatatatacatgcctcgcataagcttcagtgaccaaat |
370 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
51352485 |
ctggtcgcagatgtctgcagcactgtaatacatacatgcctcgcataagcttcagtgaccaaat |
51352548 |
T |
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