View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_41 (Length: 378)
Name: NF17166_low_41
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_41 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 36312175 - 36311815
Alignment:
| Q |
18 |
tgaagggcatttctcatatgccaactaattttgttgacaatgtgtggagctatttggaaagggttgttatctcggtcatgaatcgccactctgcaaacta |
117 |
Q |
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| T |
36312175 |
tgaagggcatttctcatatgccaactaattttgttgacaatgtgtggagctatttggaaagggttgttatctcggtcatgaatcgccactctgcaaacta |
36312076 |
T |
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| Q |
118 |
ttaccagttgcaggttgctactcgtagagctgtggagcatgttattgctaagaagaagagcaattccattcaacatgtgatgcaagctgttgatatggag |
217 |
Q |
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| T |
36312075 |
ttaccagttgcaggttgctactcgtagagctgtggagcatgttattgctaagaagaagagcaattccattcaacatgtgatgcaagctgttgatatggag |
36311976 |
T |
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| Q |
218 |
aagcacacggattacacttgtaatccggattacttgcaggaatataacgagctgatgtctcatcaagaagcatttttgaaaaaagttttggatgatgatc |
317 |
Q |
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| T |
36311975 |
aagcacacggattacacttgtaatccggagtacttgcaggaatataacgagctgatgtctcatcaagaagcatttttgaaaaaagttttggatgatgatc |
36311876 |
T |
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| Q |
318 |
gatgttcaagtactgtgaagcttgaaggggttaatgacattaaagttaatcatctgataat |
378 |
Q |
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| T |
36311875 |
gatgttcaagtactgtgaagctagaaggagttgatgacattaaagttaatcatctgataat |
36311815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 358
Target Start/End: Complemental strand, 36304631 - 36304295
Alignment:
| Q |
22 |
gggcatttctcatatgccaactaattttgttgacaatgtgtggagctatttggaaagggttgttatctcggtcatgaatcgccactctgcaaactattac |
121 |
Q |
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| T |
36304631 |
gggcatttcttatatgccaattaattttgttgaaagtgtatggaattatctggaaactgttgtagtttcggttttgaatcgtcattctgctaactattat |
36304532 |
T |
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| Q |
122 |
cagttgcaggttgctactcgtagagctgtggagcatgttattgctaagaagaagagcaattccattcaacatgtgatgcaagctgttgatatggagaagc |
221 |
Q |
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| T |
36304531 |
cagcttcaggtttcaattcgtagagctgctgagcaccttatctctaagaagaaaaagaattccattcagcatgtgcttcaagctgttgagatggagaagc |
36304432 |
T |
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| Q |
222 |
acacggattacacttgtaatccggattacttgcaggaatataacgagctgatgtctcatcaagaagcatttttgaaaaaagttttggatgatgatcgatg |
321 |
Q |
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| T |
36304431 |
ttacagactacacgggtaaccctgagtacttgcaggagtataacaagctgatgtctcatcgagaagtgtttttgaaagaagtattgaatgttgatcgagc |
36304332 |
T |
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| Q |
322 |
ttcaagtactgtgaagcttgaaggggttaatgacatt |
358 |
Q |
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| T |
36304331 |
ttcaagtactgtgaagctggaaggtgttggtgacatt |
36304295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 304
Target Start/End: Complemental strand, 36289522 - 36289406
Alignment:
| Q |
188 |
caacatgtgatgcaagctgttgatatggagaagcacacggattacacttgtaatccggattacttgcaggaatataacgagctgatgtctcatcaagaag |
287 |
Q |
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| T |
36289522 |
caacatgtgatggaagctgtcgagatggaaaaactgacagattacacttgtaatcctgagtatttgctggagtataataggctgatagctcaacaagaat |
36289423 |
T |
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| Q |
288 |
catttttgaaaaaagtt |
304 |
Q |
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| T |
36289422 |
catttgtgaaagaagtt |
36289406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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