View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_42 (Length: 378)
Name: NF17166_low_42
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 32005581 - 32005879
Alignment:
| Q |
8 |
tactccacgatctcaaattatttgattttgactcttgaatgagaaaggatcgatgtggacatgcataataaaaatttaaaactacatagcagccccaaaa |
107 |
Q |
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| T |
32005581 |
tactccacgatctcaaattatttgattttgactcttgaatgagaaaggatcgatgtggacgtgcataataaaaatttaaaactacatagcagccccaaaa |
32005680 |
T |
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| Q |
108 |
agtaattttcaccaaatatttaaatattattatatagaataaactagccagtaattattaattaaaaacactgtgaaagtgaagaatcgtaatgcccact |
207 |
Q |
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| T |
32005681 |
agtaattttcaccaaatatttaaatattattatatataataaactagccagtaattactaattaaaaacactgtgaaagtgaagaatcgtaatgcccact |
32005780 |
T |
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| Q |
208 |
aacaaataatggagactaatccaatccaataacctatagtttaactacactaatattatttcatctagcattaccaaattgtcctttcatgtgtcttaag |
307 |
Q |
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| T |
32005781 |
aacaaatggtggagactaatccaatccaataacctatag-ttaactacactaatattatttcatctagcattaccaaattgtcctttcatgtgtcttaag |
32005879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 366
Target Start/End: Original strand, 32005900 - 32005937
Alignment:
| Q |
329 |
tctagctcctttaccatggaattatattggtacatgat |
366 |
Q |
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| T |
32005900 |
tctagctcctttaccatggaattatattggtacatgat |
32005937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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