View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_46 (Length: 360)
Name: NF17166_low_46
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_46 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 49 - 344
Target Start/End: Complemental strand, 101883 - 101585
Alignment:
| Q |
49 |
tattatagttaatttacttttaa---caacccagaagaggaacaattgtgaacacaaaataatcaaaacacaattgtttaattaatcaaggaaatcacaa |
145 |
Q |
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| T |
101883 |
tattatagttaatttacttttaataacaacccaggagaggaacaattgtgaacacaaaataatcaaagcacaattgtttaattaatcaaggaaatcacaa |
101784 |
T |
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| Q |
146 |
tggaaatataacattgaatattgtttaatatgtgataaatggttcaattatggtatcatccaatcaatcccctttcatatattgctccaagtgtatcaac |
245 |
Q |
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| T |
101783 |
tggaaatataacattgaatattgtttaatatgtgataaattgttcaatcatggtatcatccaatcaatcccctttcatatattgctcgaagagtatcaac |
101684 |
T |
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| Q |
246 |
cttaacctcgacaggaaccacgttcataacccaaactggattcttaatcaaagcagatgcaaatccacccaagttagcattcatatccaaatgatttat |
344 |
Q |
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| T |
101683 |
cttaacctcgacaagaaccacgttcataacccaaacaggattcttaatcaaagcagatgcaaatccaccatagctagcattcatatccaaatgatttat |
101585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 101937 - 101899
Alignment:
| Q |
13 |
attgaaaatataatatgatttcaaattataactctatat |
51 |
Q |
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| T |
101937 |
attgaaaatataatatgatttcaaattataactctatat |
101899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 204 - 334
Target Start/End: Original strand, 45784912 - 45785042
Alignment:
| Q |
204 |
tccaatcaatcccctttcatatattgctccaagtgtatcaaccttaacctcgacaggaaccacgttcataacccaaactggattcttaatcaaagcagat |
303 |
Q |
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| T |
45784912 |
tccaatcagtcccctttcatatattgccccaagggtgtcaaccttagcctggacaggaaccacattcataacccaaacaggattcttaactaaagcagat |
45785011 |
T |
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| Q |
304 |
gcaaatccacccaagttagcattcatatcca |
334 |
Q |
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| T |
45785012 |
gcaaatccacccaagttagcattcatatcca |
45785042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 123 - 193
Target Start/End: Original strand, 10281348 - 10281418
Alignment:
| Q |
123 |
ttaattaatcaaggaaatcacaatggaaatataacattgaatattgtttaatatgtgataaatggttcaat |
193 |
Q |
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| T |
10281348 |
ttaattaatcaaggaaatcacaatgaaaatataacattgaatattgtttaatatgtgataaatggttcaat |
10281418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 219 - 331
Target Start/End: Original strand, 10281461 - 10281577
Alignment:
| Q |
219 |
ttcatatattgctccaagtgtatcaaccttaacctcgacaggaaccacgttc----ataacccaaactggattcttaatcaaagcagatgcaaatccacc |
314 |
Q |
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||||||||||||||||||||||||||||||| | | |||||||||||||||| ||||||||||| | ||||||||||||||| ||||||||||||| |
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| T |
10281461 |
ttcatatattgctccaagtgtatcaaccttagcatggacaggaaccacgttcatatataacccaaacatggttcttaatcaaagcaaatgcaaatccacc |
10281560 |
T |
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| Q |
315 |
caagttagcattcatat |
331 |
Q |
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| T |
10281561 |
gtagttagcattcatat |
10281577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 28638543 - 28638624
Alignment:
| Q |
251 |
cctcgacaggaaccacgttcataacccaaactggattcttaatcaaagcagatgcaaatccacccaagttagcattcatatc |
332 |
Q |
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| T |
28638543 |
cctcgaccggaacaacattcatgacccaaactggatcatcaatcattgcagctgcaaatcctcccaagtaagcattcatatc |
28638624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 334
Target Start/End: Original strand, 503625 - 503700
Alignment:
| Q |
259 |
ggaaccacgttcataacccaaactggattcttaatcaaagcagatgcaaatccacccaagttagcattcatatcca |
334 |
Q |
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| T |
503625 |
ggaacaacattcataacccaaactggatatttcaccaatgcagctgcaaatccaccaaagccagcattcatatcca |
503700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 48014451 - 48014499
Alignment:
| Q |
126 |
attaatcaaggaaatcacaatggaaatataacattgaatattgtttaat |
174 |
Q |
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| T |
48014451 |
attaatcaagaaaatcacaatcgaaatattttattgaatattgtttaat |
48014499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 124 - 193
Target Start/End: Original strand, 13593 - 13662
Alignment:
| Q |
124 |
taattaatcaaggaaatcacaatggaaatataacattgaatattgtttaatatgtgataaatggttcaat |
193 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
13593 |
taattaatcaaggaaattacaacggaaatataacattgaatattgattaatatgtgataaatggttcaat |
13662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 329
Target Start/End: Original strand, 64236 - 64361
Alignment:
| Q |
204 |
tccaatcaatcccctttcatatattgctccaagtgtatcaaccttaacctcgacaggaaccacgttcataacccaaactggattcttaatcaaagcagat |
303 |
Q |
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||||||||| || ||||||||||||||||||||||||||||| ||| | | | |||||| || ||||||||||||| |||| |||| | | || | |
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| T |
64236 |
tccaatcaaccctctttcatatattgctccaagtgtatcaactttagcttgaataggaacaacattcataacccaaataggatatttaacaagtgaagct |
64335 |
T |
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| Q |
304 |
gcaaatccacccaagttagcattcat |
329 |
Q |
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| T |
64336 |
gcaaatccacccaaataagcattcat |
64361 |
T |
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