View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_low_47 (Length: 353)

Name: NF17166_low_47
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_low_47
NF17166_low_47
[»] chr2 (3 HSPs)
chr2 (195-353)||(33556949-33557108)
chr2 (34-87)||(33557176-33557229)
chr2 (309-353)||(33547246-33547290)
[»] chr6 (3 HSPs)
chr6 (95-166)||(20213084-20213155)
chr6 (95-166)||(22107107-22107178)
chr6 (95-128)||(14199909-14199942)
[»] chr5 (1 HSPs)
chr5 (95-166)||(29173533-29173604)
[»] chr4 (3 HSPs)
chr4 (95-166)||(21660106-21660177)
chr4 (95-166)||(21668870-21668941)
chr4 (95-145)||(47386753-47386803)
[»] chr3 (3 HSPs)
chr3 (95-166)||(2667905-2667976)
chr3 (95-166)||(8075089-8075160)
chr3 (95-145)||(52769945-52769995)
[»] chr1 (2 HSPs)
chr1 (95-166)||(52116743-52116814)
chr1 (95-147)||(26264302-26264354)
[»] scaffold0300 (1 HSPs)
scaffold0300 (95-128)||(4421-4454)
[»] chr8 (2 HSPs)
chr8 (95-148)||(7347898-7347951)
chr8 (95-143)||(44595817-44595865)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 7e-71; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 195 - 353
Target Start/End: Complemental strand, 33557108 - 33556949
Alignment:
Q  195 atcaatcaaaataactcaaacaaatgtataaatcaccaaagaagtaatgcaaattaatatttaatttttgttttcatttgatcatgaatatatagat-gg 293  Q
    ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||    
T  33557108 atcaatctaaataactcaaacaaatgtataaatcaccacagaagcaatgcaaattaatatttaaattttgttttcatttgatcatgaatatatagatggg 33557009  T
Q  294 ataaatatatgtagtttggttagccatcaatgtcttcctcttgggatcgtccatttaaca 353  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33557008 ataaatatatgtagtttggttagccatcaatgtcttcctcttgggatcgtccatttaaca 33556949  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 33557229 - 33557176
Alignment:
Q  34 cactaatagaactgaatgagtacttcaatcttttgcgtgaaacttttatattaa 87  Q
    ||||||||||||| |||||||||| |||||||||  | |||||||||| |||||    
T  33557229 cactaatagaactaaatgagtactccaatcttttaagcgaaacttttagattaa 33557176  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 33547290 - 33547246
Alignment:
Q  309 ttggttagccatcaatgtcttcctcttgggatcgtccatttaaca 353  Q
    |||||||||||||||| |||||||| | ||| |||||||||||||    
T  33547290 ttggttagccatcaatatcttcctcctcggaccgtccatttaaca 33547246  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 20213155 - 20213084
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacactaatgataattgaacctgaaacattgacgaagagcacact 166  Q
    ||||||||||||||| ||||| ||||||||||||  |  ||| |||||||| ||||||| || |||||||||    
T  20213155 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagcacact 20213084  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 22107178 - 22107107
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacactaatgataattgaacctgaaacattgacgaagagcacact 166  Q
    ||||||||||||||| ||||| ||||||||||||  |  ||| |||||||| ||||||| || |||||||||    
T  22107178 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgagacattgaggaggagcacact 22107107  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 128
Target Start/End: Original strand, 14199909 - 14199942
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacacta 128  Q
    ||||||||||||||||||||| ||||||||||||    
T  14199909 aagaagctaaattagtccacccaaattgacacta 14199942  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 29173604 - 29173533
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacactaatgataattgaacctgaaacattgacgaagagcacact 166  Q
    ||||||||||||||| ||||| |||||||||| |  |||||| ||||||||||| | || || |||||||||    
T  29173604 aagaagctaaattagcccacctaaattgacaccagagataatcgaacctgaaacctcgaggaggagcacact 29173533  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 21660106 - 21660177
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacactaatgataattgaacctgaaacattgacgaagagcacact 166  Q
    ||||||||||||||||| ||| ||||||||||||  |||||| |||| ||| || | || ||||||||||||    
T  21660106 aagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacact 21660177  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 21668870 - 21668941
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacactaatgataattgaacctgaaacattgacgaagagcacact 166  Q
    ||||||||||||||||| ||| ||||||||||||  |||||| |||| ||| || | || ||||||||||||    
T  21668870 aagaagctaaattagtctacctaaattgacactagagataatcgaacttgagacctcgaggaagagcacact 21668941  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 47386753 - 47386803
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacactaatgataattgaacctga 145  Q
    ||||||||||||||| ||||| ||||||||||||  || ||||||||||||    
T  47386753 aagaagctaaattagcccacctaaattgacactagagagaattgaacctga 47386803  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 2667976 - 2667905
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacactaatgataattgaacctgaaacattgacgaagagcacact 166  Q
    ||||||||||| ||| ||||| ||||||||||||  |||||| |||||||| || | || ||||||||||||    
T  2667976 aagaagctaaactagcccacctaaattgacactagagataatcgaacctgagacctcgaggaagagcacact 2667905  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 8075089 - 8075160
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacactaatgataattgaacctgaaacattgacgaagagcacact 166  Q
    ||||||||||||||| ||||| ||||||||||||  |  ||| ||||||||||| |||| || |||||||||    
T  8075089 aagaagctaaattagcccacccaaattgacactagagggaatcgaacctgaaaccttgaggaggagcacact 8075160  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 52769945 - 52769995
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacactaatgataattgaacctga 145  Q
    ||||||||||||||| ||||| ||||||||||||| || ||| ||||||||    
T  52769945 aagaagctaaattagcccacctaaattgacactaaagagaatcgaacctga 52769995  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 52116743 - 52116814
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacactaatgataattgaacctgaaacattgacgaagagcacact 166  Q
    ||||||||||||||| |||||  ||||| |||||  || |||||||||||| ||||||| || |||||||||    
T  52116743 aagaagctaaattagcccaccttaattggcactagggagaattgaacctgagacattgaggaggagcacact 52116814  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 26264302 - 26264354
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacactaatgataattgaacctgaaa 147  Q
    ||||| ||||||||||||| | |||||||||| || || ||||||||||||||    
T  26264302 aagaaactaaattagtccatccaaattgacaccaaagagaattgaacctgaaa 26264354  T

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Target: scaffold0300 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 128
Target Start/End: Complemental strand, 4454 - 4421
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacacta 128  Q
    ||||||||||||||||||||| ||||||||||||    
T  4454 aagaagctaaattagtccacccaaattgacacta 4421  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 7347951 - 7347898
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacactaatgataattgaacctgaaac 148  Q
    ||||||||||||||| ||||| |||||||||| |  || |||||||||||||||    
T  7347951 aagaagctaaattagcccacctaaattgacacaagagagaattgaacctgaaac 7347898  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 44595817 - 44595865
Alignment:
Q  95 aagaagctaaattagtccaccaaaattgacactaatgataattgaacct 143  Q
    ||||||||||||||||||| | ||||||||||||| || ||| ||||||    
T  44595817 aagaagctaaattagtccatctaaattgacactaaagagaatcgaacct 44595865  T

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