View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_48 (Length: 349)
Name: NF17166_low_48
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 36311798 - 36311462
Alignment:
| Q |
1 |
ttgaatcaggccattgacttgaaggcaagattaattgcctattggaagattgtgctgaggaggctcattgatagtattgctttgcatttgatgcttagca |
100 |
Q |
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| T |
36311798 |
ttgaatcaggcctttgacttgaaggcaagattaattgcctattggaagattgtactgaggaggctcattgatagtattgctttgcatttgatgcttagca |
36311699 |
T |
|
| Q |
101 |
tcaatgaactgattagcaatgatctgcagaaggagatttgtaatgaacttggtggcagtgttgagaggctgcttgaggaatctccatctatttctggtaa |
200 |
Q |
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| T |
36311698 |
tcaatgaactgattagcaatgatctgcagaaggagatttgtaatgaacttggtggcagtgttgagaggctgcttgaggaatctccatctatttctggtaa |
36311599 |
T |
|
| Q |
201 |
gagacaaagattaagcagcagtgtgaaagttcttagagaaagcaaggagactgtggccaacattatcgacaggattggagtctatggcgttaactagaag |
300 |
Q |
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| T |
36311598 |
gagacaaagattaagcagcagtgtgaaagttcttagagaaagcaaggagactgtggccaatattatggacaggattggagtctatggcgttaactagaag |
36311499 |
T |
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| Q |
301 |
aattgcttgatgtttcttaaggatatatgcagttgtc |
337 |
Q |
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| T |
36311498 |
aattgcttgatgtttcttaaggatatatgcagttgtc |
36311462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 34 - 286
Target Start/End: Complemental strand, 36289285 - 36289021
Alignment:
| Q |
34 |
attgcctattggaagattgtgctgaggaggctcattgatagtattgctttgcatttgatgcttagcatcaatgaactgattagcaatgatctgcagaagg |
133 |
Q |
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| T |
36289285 |
attgcttattggaagattgttttaaggaggctcattgacagcatagctctgcatttaatgttgagcatcaatgaactgattaacaatgatttgcagaagg |
36289186 |
T |
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| Q |
134 |
agatttgtaatgaact------------tggtggcagtgttgagaggctgcttgaggaatctccatctatttctggtaagagacaaagattaagcagcag |
221 |
Q |
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| T |
36289185 |
agatttgtaatgatcttttgtctccaagtggtggtgggattgagaggctgcttgaagagtctccgtctatttctggaaagagggagaagctaagtcgaag |
36289086 |
T |
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| Q |
222 |
tgtgaaagttcttagagaaagcaaggagactgtggccaacattatcgacaggattggagtctatg |
286 |
Q |
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| T |
36289085 |
tgtcaaagttcttagagaaagtaaggagactgttgccagaattatggacaggattggaatctatg |
36289021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 312
Target Start/End: Complemental strand, 36292225 - 36292071
Alignment:
| Q |
158 |
gtgttgagaggctgcttgaggaatctccatctatttctggtaagagacaaagattaagcagcagtgtgaaagttcttagagaaagcaaggagactgtggc |
257 |
Q |
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||||| |||||||||||||||| ||||| || || || || |||||||| | || ||||| ||||||| |||| | ||||||||||| ||||| ||||| |
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| T |
36292225 |
gtgttaagaggctgcttgaggagtctccttcaatatcaggcaagagacagaagttgagcaggagtgtgacagttttgagagaaagcaaagagaccgtggc |
36292126 |
T |
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| Q |
258 |
caacattatcgacaggattggagtctatggcgttaactagaagaattgcttgatg |
312 |
Q |
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| T |
36292125 |
caacattatggacaggattggaaattatggagataactagaagcagtgcttgatg |
36292071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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