View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_52 (Length: 341)
Name: NF17166_low_52
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_52 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 335
Target Start/End: Original strand, 42519087 - 42519411
Alignment:
| Q |
11 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519087 |
cagagagcatggtaagacgtcttccaaagattctagttacagtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagt |
42519186 |
T |
|
| Q |
111 |
tagtgtctgactgtcgaatttgcagtattgattatctgcaggcttaatgtttagctgcttagcgtaaacatctggaaagaacttcattaagaatggatcc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42519187 |
tagtgtctgactgtcgaatttgcagtattgattatctgcaggcttaatgtttagctgcttagcataaacatctggaaagaacttcattaagaatggatcc |
42519286 |
T |
|
| Q |
211 |
attgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaacactt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42519287 |
attgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaacactt |
42519386 |
T |
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| Q |
311 |
aaatggaaaaaagaagcagataaat |
335 |
Q |
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|||||||||||||||| | |||||| |
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| T |
42519387 |
aaatggaaaaaagaagaaaataaat |
42519411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 1240866 - 1241178
Alignment:
| Q |
11 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagt |
110 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1240866 |
cagagagcatggtaagatgtcttccaaagattctagttgcggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacaacgt |
1240965 |
T |
|
| Q |
111 |
tagtgtctgactgtcgaatttgcagtattgattatctgcaggcttaatgtttagctgcttagcgtaaacatctggaaagaacttcattaaga----atgg |
206 |
Q |
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| T |
1240966 |
tagtgtctgactgtcgaatttgcagtattgattatcggtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatgg |
1241065 |
T |
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| Q |
207 |
atccattgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaac |
306 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||| |
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| T |
1241066 |
atccattgccgtaactccacctatacattaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacata-tttggcaaac |
1241164 |
T |
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| Q |
307 |
acttaaatggaaaa |
320 |
Q |
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|||||| ||||||| |
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| T |
1241165 |
acttaattggaaaa |
1241178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 42550991 - 42550903
Alignment:
| Q |
18 |
catggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaaca |
106 |
Q |
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|||||| ||||| |||||||| || |||||| |||||||| ||||| || || |||||||| ||||||||||||||||| ||||||| |
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| T |
42550991 |
catggtgagacgccttccaaacgatcgagttactgtggatgccccaagtgatgctacaagagcagccaaatacaaagaggaggtaaaca |
42550903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 320
Target Start/End: Original strand, 41972499 - 41972807
Alignment:
| Q |
11 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaagccacaagagcggccaaatacaaagaggatgtaaacagagt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
41972499 |
cagagagcatggtaagacgtcttccaaagattctagttacggtggatgctccaagagaatccacaagagcggccaaatacaaagaggatgtaaacaacgt |
41972598 |
T |
|
| Q |
111 |
tagtgtctgactgtcgaatttgcagtattgattatctgcaggcttaatgtttagctgcttagcgtaaacatctggaaagaacttcattaagaatggatcc |
210 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| |
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| T |
41972599 |
-agtgtctgactgtcgaatttgcagtattgattatccgtaggcttaatgtttagctccttagcctaaacatctggaaagaacttcagcaagaatggatcc |
41972697 |
T |
|
| Q |
211 |
attgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaacactt |
310 |
Q |
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||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41972698 |
attgccgtaactccacctatacattaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacatattttgtcaaacactt |
41972797 |
T |
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| Q |
311 |
aaatggaaaa |
320 |
Q |
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| T |
41972798 |
caatggaaaa |
41972807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 206 - 320
Target Start/End: Original strand, 1 - 115
Alignment:
| Q |
206 |
gatccattgccgtaactccacctatacattaattcattatcatgtcattaatcagaaaattattgtcacatgaacaattcttgagacatattttgtcaaa |
305 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1 |
gatccattgccgtaactccacctatacattaattgtttatcatgtaattaatcagaaaattattgtcatatgaacaattcttgagacatattttgtcaaa |
100 |
T |
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| Q |
306 |
cacttaaatggaaaa |
320 |
Q |
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||||| ||||||||| |
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| T |
101 |
cacttcaatggaaaa |
115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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