View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_62 (Length: 317)
Name: NF17166_low_62
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_62 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 317
Target Start/End: Original strand, 44262020 - 44262326
Alignment:
| Q |
11 |
cagagaaagcaatattgaaaagtatcaatgttgtgagatttccttggctgccaagagtttctttaatctctccagagtaaattggatgttccatggctca |
110 |
Q |
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| T |
44262020 |
cagagaaagcaatattgaaaagtatcaatgttgtgagatttccttggctgccaagagtttctttaatctctccagagtaaattggatgttccatggctca |
44262119 |
T |
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| Q |
111 |
agaacatctagtcgaggcgtctataaggaagtggaacttccaagctcctcgggatggatgcatttaaggttgtaagtatccttgaccttccaatagtgaa |
210 |
Q |
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| T |
44262120 |
agaacatctagtcgaggcgtctataaggaagtggaacttccaagctccttgggatggatgcatttaaggttgtaagtatccctgaccttccaatagtgaa |
44262219 |
T |
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| Q |
211 |
attattgcttatctaaaaaatgttcagtgtggtgagattttccatggattttgacaatggtgatgaaaaagtgttgcaacataagctaagagaggttaga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44262220 |
attattgcttatctaaaaaatgttcagtgtggtgagattttccatggattttgacaatggtgatgaaaaagtgttgcaacagaagctaagagaggttaga |
44262319 |
T |
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| Q |
311 |
ctttaaa |
317 |
Q |
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||||||| |
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| T |
44262320 |
ctttaaa |
44262326 |
T |
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