View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17166_low_64 (Length: 313)
Name: NF17166_low_64
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_64 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 6 - 299
Target Start/End: Complemental strand, 37008225 - 37007930
Alignment:
| Q |
6 |
cataggaagtggatttgctggacttcaagggattatatatgctggaacaaattgctttcatagaagaaaagttatgtatggtctttctcctcctaatgaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37008225 |
cataggaagtggatttgctggacttcaagggattatatatgctggaacaaattgctttcatagaagaaaagttatgtatggtctttctcctcctaatgaa |
37008126 |
T |
|
| Q |
106 |
attcaaaatgcaaagaagggtcaaggtttcatcaatggtatattaagatatacttacaa--tannnnnnnncattatttcaaaatcaatattttattgaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |
|
|
| T |
37008125 |
attcaaaatgcaaagaagggtcaaggtttcaccaatggtatattaagatatacttacaatttttttttcttcattatttcaaaatcaatattttgttgaa |
37008026 |
T |
|
| Q |
204 |
gagaaactaatgctattataaaatagcagtactaattcctgttagccaattagcctaagaaatataaacttttggtatcttgtgtaggaacgtttt |
299 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37008025 |
gagaaactaatgctattataaaatagcaggactaattcctgttagccaattagcctaagaaatataaacttttggtatcttgtgtaggaacgtttt |
37007930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 37025543 - 37025463
Alignment:
| Q |
16 |
ggatttgctggacttcaagggattatatatgctggaacaaattgctttcatagaagaaaagttatgtatggtctttctcct |
96 |
Q |
| |
|
||||||| |||||||||||||| |||| || |||||||||||||| |||||||||||||| || ||||| ||||||||| |
|
|
| T |
37025543 |
ggatttggaggacttcaagggatgctatacgcaggaacaaattgcttccatagaagaaaagtaatttatggcctttctcct |
37025463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University