View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_65 (Length: 311)
Name: NF17166_low_65
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 29471259 - 29470954
Alignment:
| Q |
1 |
ctgaatgaaggctaccctt-agaaagcctaacaaaatcattttgaagattagatttagatcattgtttgtatatgtactacatattcatcttttccacat |
99 |
Q |
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| T |
29471259 |
ctgaatgaaggctaccctttagatagcctaacaaaatcattttgaagactagatttagatcattgtttgtatatgtcctacatatttatctttttcacat |
29471160 |
T |
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| Q |
100 |
ctcttattacatatcctcaact-------------gatcttttagaatactttgacattaccatatcttagtgtttgatgtaattggttcacaaactata |
186 |
Q |
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| T |
29471159 |
ctcttgttgcatatcctcaactttcttaaaactaggatcttttagaatactttgacatgtc-atatcttagtgtttgatgtaattggttcacaaactata |
29471061 |
T |
|
| Q |
187 |
gctcgtcttatgagggaaatggattagttatatatctcatccatccgataaaaattaatggttgagatcatttaaaactaacttaacaattttgaaatta |
286 |
Q |
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| T |
29471060 |
gctgctcttatgagggaaatggattagttatatatctcatccatcccataaaaattaatggttgagatcatttaaaactaacttaacaattttgaaatta |
29470961 |
T |
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| Q |
287 |
gagttgt |
293 |
Q |
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||||||| |
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| T |
29470960 |
gagttgt |
29470954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 29461624 - 29461503
Alignment:
| Q |
1 |
ctgaatgaaggctaccctt-agaaagcctaacaaaatcattttgaagattagatttagatcattgtttgtatatgtactacatattcatcttttccacat |
99 |
Q |
| |
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||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29461624 |
ctgaatgaaggctaccctttagctagccaaacaaaattattttgaagattagatttagatcattgtttgtatatgtaatacatattcatcttttccacat |
29461525 |
T |
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| Q |
100 |
ctcttattacatatcctcaact |
121 |
Q |
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|||||| || |||||||||||| |
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| T |
29461524 |
ctcttaataaatatcctcaact |
29461503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 211
Target Start/End: Complemental strand, 29461422 - 29461367
Alignment:
| Q |
156 |
agtgtttgatgtaattggttcacaaactatagctcgtcttatgagggaaatggatt |
211 |
Q |
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||||||||||||||||||||||||||| ||| ||||| ||| ||||||| |||||| |
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| T |
29461422 |
agtgtttgatgtaattggttcacaaaccataactcgtattacgagggaattggatt |
29461367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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