View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_7 (Length: 673)
Name: NF17166_low_7
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 630; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 1 - 662
Target Start/End: Complemental strand, 49944289 - 49943628
Alignment:
| Q |
1 |
gaactagaacaaggagacttgcacgagaggaagccgcggttcactcggcagcagaacgagactatgcagccagggtagctgcagagttgggttactttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49944289 |
gaactagaacaaggagacttgcacgagaggaagccgcggttcaatcggcagcagaacgagactatgcagccagggtagctgcagagttgggttactttgt |
49944190 |
T |
|
| Q |
101 |
ttccgagtccaccaaaggggatgatttaaaggagaatgtaggtcattcaagaggagcaaccaattcaagctcctttttcggcatgagtgaagggaaacat |
200 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
49944189 |
ttccgactccaccaaaggggatgatttaaaggagaatgtaggtcattcaagaggagcaaccgattcaagctcctttttcggcatgagtgaagggaaacat |
49944090 |
T |
|
| Q |
201 |
gatcatcagcgtgtagactcgggtgttgattatgatatgaaacatgctgatttggaaaagccatttagagtgaaatttccaggtccaggacttcagtttt |
300 |
Q |
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|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49944089 |
gatcatcagtgtgtagactcgggtgttgattatgatatgaaacatgctgatttggaaaagccatttagagtgaaatttccaggtccaggacttcagtttt |
49943990 |
T |
|
| Q |
301 |
ggtctagagttataaaaaggcattggaaacacaaatttaagaggaagtcgaagaggagagatatagctgcatctggtgttgccatcaaaagaagaattct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49943989 |
ggtctagagttataaaaaggcattggaaacacaaatttaagaggaagtcgaagaggagagatatagctgcatctggtgttgccatcaaaagaagaattct |
49943890 |
T |
|
| Q |
401 |
caaatgcagcgcatcggcagcacgtgcatactttcgcggtcaatcacagggaaagtctggagagccttcatcgtcttctgaatgcttttgttctacaaat |
500 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
49943889 |
caaatgcagtgcatcggcagcacgtgcatactttcgcggtcaatcacagggaaagtctggagagccttcatcatcttctgaatgcttttgttctacaaat |
49943790 |
T |
|
| Q |
501 |
cttgatacaaatttggtaaacgatgatgttgacaaaattacagaatatgttgccgatggcgatgatgataacgatattgttgcagaacatgtagatgggg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49943789 |
cttgatacaaatttggtaaacgatgatgttgacaaaattacagaatatgttgccgatggcgatgatgataacgatattgttgcagaacatgtagatgggg |
49943690 |
T |
|
| Q |
601 |
tagatgctctgcagcctgaagacgtcagaagtactcttcccgttatgttggattctgttcat |
662 |
Q |
| |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
49943689 |
tagatgctctgcagcctgaagacctcacaagtactcttcccgttatgttggattctgttcat |
49943628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 484
Target Start/End: Original strand, 1903865 - 1904127
Alignment:
| Q |
222 |
ggtgttgattatgatatgaaacatgctgatttggaaaagccatttagagtgaaatttccaggtccaggacttcagttttggtctagagttataaaaaggc |
321 |
Q |
| |
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||||||||||| |||| ||| || || ||||||||||| ||||| |||||||||||| || |||| ||| |||||||||||||| || ||| |
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| T |
1903865 |
ggtgttgattacgatacgaagcacgcagatttggaaaaagcatttggagtgaaatttcttgggtcagggtttcgattttggtctagagtattatcggggc |
1903964 |
T |
|
| Q |
322 |
attggaaacacaaatttaagaggaagtcgaagaggagagatatagctgcatctggtgttgccatcaaaagaagaattctcaaatgcagcgcatcggcagc |
421 |
Q |
| |
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|| ||||| ||| |||||| |||||| | || |||| | || ||||||||||||||| | |||| |||||| | || | |||||||||||||| |
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| T |
1903965 |
ataggaaaaacagatttaaaaggaaggctaatgggagtaagatctatgcatctggtgttgctacaaaaaaaagaatgtttgaacgtagcgcatcggcagc |
1904064 |
T |
|
| Q |
422 |
acgtgcatactttcgcggtcaatcacagggaaagtctggagagccttcatcgtcttctgaatg |
484 |
Q |
| |
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|||||||||||||| | ||||||||| || ||| ||| |||||| |||| ||||||||||| |
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| T |
1904065 |
tcgtgcatactttcgtgatcaatcacaagggaaggatggggagcctgcatcatcttctgaatg |
1904127 |
T |
|
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