View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_low_73 (Length: 293)

Name: NF17166_low_73
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_low_73
NF17166_low_73
[»] chr8 (3 HSPs)
chr8 (66-250)||(14258470-14258655)
chr8 (10-51)||(14258437-14258478)
chr8 (208-250)||(34711090-34711132)
[»] chr2 (3 HSPs)
chr2 (127-162)||(29988897-29988932)
chr2 (129-164)||(45155156-45155191)
chr2 (210-254)||(38983098-38983142)
[»] chr7 (1 HSPs)
chr7 (128-183)||(16861518-16861575)
[»] chr4 (4 HSPs)
chr4 (128-183)||(23042602-23042659)
chr4 (208-253)||(30191902-30191947)
chr4 (136-186)||(43117936-43117988)
chr4 (131-188)||(15170963-15171022)
[»] chr1 (2 HSPs)
chr1 (127-189)||(15285515-15285579)
chr1 (136-189)||(49184253-49184308)
[»] chr6 (1 HSPs)
chr6 (131-188)||(7257410-7257469)
[»] chr5 (1 HSPs)
chr5 (208-244)||(35349510-35349546)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 66 - 250
Target Start/End: Original strand, 14258470 - 14258655
Alignment:
Q  66 aacaaactcctagggttgttaatttttgtaaatttgtggaaagattatatgataatatctttttcgatcttatttataaaaaacaattgattttttaaac 165  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  14258470 aacaaactcctggggttgttaatttttgtaaatttgtggaaagattatatgataatacctttttcgatcttatttataaaaaacaattga-tttttaaac 14258568  T
Q  166 attgaataattgatgtatttgatcgaatacctcgat-gaatacctcaatgaatctaaaatatcaatta-ttttttataaataagact 250  Q
    ||| |||||||||||||||||||  |     | ||| | |||||| |||||||||||||||||||||| ||||||||||||||||||    
T  14258569 attaaataattgatgtatttgatatatattatagatcggataccttaatgaatctaaaatatcaattatttttttataaataagact 14258655  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 14258437 - 14258478
Alignment:
Q  10 aaatgtaagaggtaaaccatttataagcatattaacaaactc 51  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  14258437 aaatgtaagaggtaaaccatttatatgcatattaacaaactc 14258478  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 34711132 - 34711090
Alignment:
Q  208 ctcaatgaatctaaaatatcaattattttttataaataagact 250  Q
    ||||||||||||||||  |||||| ||||||||||||||||||    
T  34711132 ctcaatgaatctaaaaagtcaatttttttttataaataagact 34711090  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 162
Target Start/End: Original strand, 29988897 - 29988932
Alignment:
Q  127 tttcgatcttatttataaaaaacaattgatttttta 162  Q
    |||||||||||||||||||||| |||||||||||||    
T  29988897 tttcgatcttatttataaaaaaaaattgatttttta 29988932  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 164
Target Start/End: Complemental strand, 45155191 - 45155156
Alignment:
Q  129 tcgatcttatttataaaaaacaattgattttttaaa 164  Q
    |||||||||||||||| |||||||||||||||||||    
T  45155191 tcgatcttatttataagaaacaattgattttttaaa 45155156  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 38983098 - 38983142
Alignment:
Q  210 caatgaatctaaaatatcaattattttttataaataagactagag 254  Q
    |||||||||||||| ||||| | ||||||||||||| ||||||||    
T  38983098 caatgaatctaaaaaatcaacttttttttataaataggactagag 38983142  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 16861518 - 16861575
Alignment:
Q  128 ttcgatcttatttataaaaaacaattgattttttaaa--cattgaataattgatgtat 183  Q
    |||| |||||| |||||||||||||||| |||||| |  |||||||||||||||||||    
T  16861518 ttcggtcttatatataaaaaacaattgactttttagattcattgaataattgatgtat 16861575  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 23042602 - 23042659
Alignment:
Q  128 ttcgatcttatttataaaaaacaattgattttttaaa--cattgaataattgatgtat 183  Q
    ||||||||||||||||| |||||||||||| ||||||   |||||||||| |||||||    
T  23042602 ttcgatcttatttataagaaacaattgattatttaaatttattgaataatcgatgtat 23042659  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 30191947 - 30191902
Alignment:
Q  208 ctcaatgaatctaaaatatcaattattttttataaataagactaga 253  Q
    |||||||||||||||| ||||||| ||| ||||||||| |||||||    
T  30191947 ctcaatgaatctaaaaaatcaattttttcttataaataggactaga 30191902  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 43117988 - 43117936
Alignment:
Q  136 tatttataaaaaacaattgattttttaaa--cattgaataattgatgtatttg 186  Q
    ||||||||| ||| ||||||||||||| |  ||||||||||||||||||||||    
T  43117988 tatttataagaaaaaattgattttttacattcattgaataattgatgtatttg 43117936  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 15171022 - 15170963
Alignment:
Q  131 gatcttatttataaaaaacaattgattttttaaa--cattgaataattgatgtatttgat 188  Q
    ||||||||||| ||||||||||| | |||||| |  |||||||||||| |||||||||||    
T  15171022 gatcttatttacaaaaaacaatttactttttagatacattgaataatttatgtatttgat 15170963  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 189
Target Start/End: Complemental strand, 15285579 - 15285515
Alignment:
Q  127 tttcgatcttatttataaaaaacaattgattttttaaac--attgaataattgatgtatttgatc 189  Q
    |||||||| ||||||||| | ||| ||||||||||| |   ||||||||||||||||||||||||    
T  15285579 tttcgatcatatttataagagacacttgattttttagattgattgaataattgatgtatttgatc 15285515  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 49184253 - 49184308
Alignment:
Q  136 tatttataaaaaacaattgattttttaaa--cattgaataattgatgtatttgatc 189  Q
    ||||||||||||| |||| ||||||||||  |||| ||||||| ||||||||||||    
T  49184253 tatttataaaaaataatttattttttaaattcatttaataattaatgtatttgatc 49184308  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 7257469 - 7257410
Alignment:
Q  131 gatcttatttataaaaaacaattgattttttaaa--cattgaataattgatgtatttgat 188  Q
    |||| ||||||||||| | |||||| ||||||||  |||||||||||| |||||||||||    
T  7257469 gatcctatttataaaataaaattgactttttaaattcattgaataattaatgtatttgat 7257410  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 35349510 - 35349546
Alignment:
Q  208 ctcaatgaatctaaaatatcaattattttttataaat 244  Q
    ||||||||||||||||  |||||||||||||||||||    
T  35349510 ctcaatgaatctaaaaagtcaattattttttataaat 35349546  T

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