View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_low_74 (Length: 293)

Name: NF17166_low_74
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_low_74
NF17166_low_74
[»] chr3 (6 HSPs)
chr3 (70-277)||(7899876-7900072)
chr3 (18-94)||(7899799-7899876)
chr3 (14-56)||(2122704-2122746)
chr3 (14-56)||(28704727-28704769)
chr3 (14-56)||(28882754-28882796)
chr3 (14-56)||(37996887-37996929)
[»] chr6 (5 HSPs)
chr6 (14-56)||(31079612-31079654)
chr6 (14-56)||(6708117-6708159)
chr6 (25-59)||(11105283-11105317)
chr6 (14-59)||(19128150-19128195)
chr6 (14-58)||(29892964-29893008)
[»] chr4 (8 HSPs)
chr4 (14-60)||(5325797-5325843)
chr4 (14-58)||(2586334-2586378)
chr4 (14-56)||(5834830-5834872)
chr4 (14-60)||(8064185-8064231)
chr4 (14-56)||(38492335-38492377)
chr4 (14-56)||(41145612-41145654)
chr4 (14-56)||(52122945-52122987)
chr4 (15-59)||(36561790-36561834)
[»] chr2 (6 HSPs)
chr2 (14-56)||(6124173-6124215)
chr2 (14-56)||(14217230-14217272)
chr2 (25-57)||(34146179-34146211)
chr2 (13-56)||(3563851-3563894)
chr2 (14-56)||(4170578-4170620)
chr2 (14-56)||(31236262-31236304)
[»] chr1 (5 HSPs)
chr1 (14-56)||(3426848-3426890)
chr1 (14-56)||(34432459-34432501)
chr1 (14-56)||(38948732-38948774)
chr1 (14-60)||(5984223-5984269)
chr1 (14-59)||(37104117-37104162)
[»] chr7 (3 HSPs)
chr7 (14-59)||(27398123-27398168)
chr7 (14-60)||(35159858-35159904)
chr7 (14-56)||(44960211-44960253)
[»] scaffold0112 (1 HSPs)
scaffold0112 (14-58)||(42141-42185)
[»] chr5 (6 HSPs)
chr5 (17-56)||(6243237-6243276)
chr5 (14-56)||(1639858-1639900)
chr5 (14-56)||(9792319-9792361)
chr5 (14-56)||(10656820-10656862)
chr5 (14-56)||(30284683-30284725)
chr5 (14-56)||(30918378-30918420)
[»] chr8 (5 HSPs)
chr8 (14-56)||(28876642-28876684)
chr8 (14-59)||(32638932-32638977)
chr8 (16-56)||(19436274-19436314)
chr8 (16-56)||(19572423-19572463)
chr8 (14-58)||(28737253-28737297)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 70 - 277
Target Start/End: Original strand, 7899876 - 7900072
Alignment:
Q  70 tcacctatctatattggctttgagtttaggttgtgatgtaataagtctttcgtctagtgtctctaac----atgtcactagtatgataacgggcttagga 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    | |||||||||||||||||||||||||||    
T  7899876 tcacctatctatattggctttgagtttaggttgtgatgtaataagtctttcgtctagtgtctctgactattaggtcactagtatgataacgggcttagga 7899975  T
Q  166 atgatcaagtatctaacttaagaaaattgcacttaagaaaattgctctttaggcatataggattgctcacatccacctcaaacttctgaaaatatcccca 265  Q
    |||||||||||||||               |||||||||||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||| |||    
T  7899976 atgatcaagtatcta---------------acttaagaaaattgctctttagacatacaggattgctaacatgcacctcaaacttctgaaaatatctcca 7900060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 7899799 - 7899876
Alignment:
Q  18 gatacattacgtcatccattttaaagtatcggagcttcatagaga-tcatcaatcacctatctatattggctttgagt 94  Q
    |||||||| ||||||||||||| ||||||||  ||||||||  || | ||||||||||||||||||||||||||||||    
T  7899799 gatacatttcgtcatccattttgaagtatcgaggcttcatatggaatgatcaatcacctatctatattggctttgagt 7899876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 2122746 - 2122704
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||    
T  2122746 aggggatacaatacgtcatccattttgaagtatcggggcttca 2122704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 28704769 - 28704727
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||  ||||||||||||||||||||||||| ||||||    
T  28704769 aggggatacggtacgtcatccattttaaagtatcggggcttca 28704727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 28882754 - 28882796
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||  ||||||||||||||| ||||||||||||||||    
T  28882754 aggggatacggtacgtcatccattttgaagtatcggagcttca 28882796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 37996887 - 37996929
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||  ||||||||||||||||||||||||| ||||||    
T  37996887 aggggatacggtacgtcatccattttaaagtatcggggcttca 37996929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 31079654 - 31079612
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  31079654 aggggatacaatacgtcatccattttaaagtatcggagcttca 31079612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 6708117 - 6708159
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| || |||||||||||||||||||||| ||||||    
T  6708117 aggggatacaatatgtcatccattttaaagtatcggggcttca 6708159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 11105317 - 11105283
Alignment:
Q  25 tacgtcatccattttaaagtatcggagcttcatag 59  Q
    ||||||||||||||||||||||| |||||||||||    
T  11105317 tacgtcatccattttaaagtatcagagcttcatag 11105283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 19128195 - 19128150
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttcatag 59  Q
    |||||||||  ||||||| |||||||||||||| ||||||||||||    
T  19128195 aggggatacgatacgtcaaccattttaaagtattggagcttcatag 19128150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 29893008 - 29892964
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttcata 58  Q
    |||||||||| ||| ||||||||||||||||||| | ||||||||    
T  29893008 aggggatacagtacatcatccattttaaagtatctgggcttcata 29892964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 5325797 - 5325843
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttcataga 60  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  5325797 aggggatacaatacgtcatccattttaaagtatcggggcttcataga 5325843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 2586378 - 2586334
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttcata 58  Q
    |||||||||  ||||||||||||||||||||||||| ||||||||    
T  2586378 aggggatacggtacgtcatccattttaaagtatcggggcttcata 2586334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 5834872 - 5834830
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||  ||||||||||||||| ||||||||||||||||    
T  5834872 aggggatacggtacgtcatccattttgaagtatcggagcttca 5834830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 8064185 - 8064231
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttcataga 60  Q
    |||||||||  ||||||||||||||| ||||||||| ||||||||||    
T  8064185 aggggatacggtacgtcatccattttgaagtatcggggcttcataga 8064231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 38492335 - 38492377
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||    
T  38492335 aggggatacagtacgtcatccattttgaagtatcggggcttca 38492377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 41145654 - 41145612
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||    
T  41145654 aggggatacagtacgtcatccattttgaagtatcggggcttca 41145612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 52122945 - 52122987
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||    
T  52122945 aggggatacagtacgtcatccattttgaagtatcggggcttca 52122987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 36561790 - 36561834
Alignment:
Q  15 ggggatacattacgtcatccattttaaagtatcggagcttcatag 59  Q
    ||||||||| || |||||||||||| ||||||| |||||||||||    
T  36561790 ggggatacaataagtcatccattttgaagtatcagagcttcatag 36561834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 6124215 - 6124173
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  6124215 aggggatacaatacgtcatccattttaaagtatcggggcttca 6124173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 14217230 - 14217272
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| ||||||||||||||| ||||||||||||||||    
T  14217230 aggggatacaatacgtcatccattttgaagtatcggagcttca 14217272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 34146211 - 34146179
Alignment:
Q  25 tacgtcatccattttaaagtatcggagcttcat 57  Q
    |||||||||||||||||||||||||||||||||    
T  34146211 tacgtcatccattttaaagtatcggagcttcat 34146179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 3563894 - 3563851
Alignment:
Q  13 taggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    ||||||||||| ||||||||||||||| ||||||||| ||||||    
T  3563894 taggggatacaatacgtcatccattttgaagtatcggggcttca 3563851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 4170578 - 4170620
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||  ||||||||||||||| ||||||||||||||||    
T  4170578 aggggatacggtacgtcatccattttgaagtatcggagcttca 4170620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 31236262 - 31236304
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| ||||| ||||||||||||||||||| ||||||    
T  31236262 aggggatacaatacgttatccattttaaagtatcggggcttca 31236304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 3426890 - 3426848
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| ||||||||||||||||||||||||| ||||||    
T  3426890 aggggatacaatacgtcatccattttaaagtatcggggcttca 3426848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 34432459 - 34432501
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| ||||||||||||||| ||||||||||||||||    
T  34432459 aggggatacaatacgtcatccattttgaagtatcggagcttca 34432501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 38948774 - 38948732
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||  ||||||||||||||||||||||||||||||||    
T  38948774 aggggatacggtacgtcatccattttaaagtatcggagcttca 38948732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 5984269 - 5984223
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttcataga 60  Q
    |||||||||| ||||||||||||||| ||||||||| ||||| ||||    
T  5984269 aggggatacagtacgtcatccattttgaagtatcggggcttcttaga 5984223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 37104162 - 37104117
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttcatag 59  Q
    |||||||||  ||||||||||||||| ||||||||| |||||||||    
T  37104162 aggggatacgatacgtcatccattttgaagtatcggggcttcatag 37104117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 27398123 - 27398168
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttcatag 59  Q
    |||||||||| ||||||||||||||||||||||| | |||||||||    
T  27398123 aggggatacagtacgtcatccattttaaagtatccgggcttcatag 27398168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 35159904 - 35159858
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttcataga 60  Q
    |||||||||  ||| ||||||||||| ||||||||||||||||||||    
T  35159904 aggggatacgatacatcatccattttgaagtatcggagcttcataga 35159858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 44960211 - 44960253
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||  ||||||||||||||| ||||||||||||||||    
T  44960211 aggggatacgatacgtcatccattttgaagtatcggagcttca 44960253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 42141 - 42185
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttcata 58  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||    
T  42141 aggggatacagtacgtcatccattttgaagtatcggggcttcata 42185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 6243237 - 6243276
Alignment:
Q  17 ggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  6243237 ggatacaatacgtcatccattttgaagtatcggagcttca 6243276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 1639858 - 1639900
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||    
T  1639858 aggggatacagtacgtcatccattttgaagtatcggggcttca 1639900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 9792361 - 9792319
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||  ||||||||||||||||||||||||| ||||||    
T  9792361 aggggatacggtacgtcatccattttaaagtatcggggcttca 9792319  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 10656862 - 10656820
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||  ||||||||||||||||||||||||| ||||||    
T  10656862 aggggatacgatacgtcatccattttaaagtatcggggcttca 10656820  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 30284683 - 30284725
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||  ||||||||||||||| ||||||||||||||||    
T  30284683 aggggatacggtacgtcatccattttgaagtatcggagcttca 30284725  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 30918420 - 30918378
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||    
T  30918420 aggggatacaatacgtcatccattttgaagtatcggggcttca 30918378  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 28876642 - 28876684
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||    
T  28876642 aggggatacagtacgtcatccattttgaagtatcggggcttca 28876684  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 32638932 - 32638977
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttcatag 59  Q
    |||||||||  ||||||||||||||| ||||||| |||||||||||    
T  32638932 aggggatacggtacgtcatccattttgaagtatcagagcttcatag 32638977  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 19436314 - 19436274
Alignment:
Q  16 gggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||  ||||||||||||||| ||||||||||||||||    
T  19436314 gggatacggtacgtcatccattttgaagtatcggagcttca 19436274  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 19572463 - 19572423
Alignment:
Q  16 gggatacattacgtcatccattttaaagtatcggagcttca 56  Q
    |||||||  ||||||||||||||| ||||||||||||||||    
T  19572463 gggatacggtacgtcatccattttgaagtatcggagcttca 19572423  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 28737297 - 28737253
Alignment:
Q  14 aggggatacattacgtcatccattttaaagtatcggagcttcata 58  Q
    |||||||||| ||||||||||||||| || |||||| ||||||||    
T  28737297 aggggatacaatacgtcatccattttgaaatatcggggcttcata 28737253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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