View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_79 (Length: 285)
Name: NF17166_low_79
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_79 |
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| [»] scaffold0200 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 121 - 270
Target Start/End: Original strand, 42519628 - 42519777
Alignment:
| Q |
121 |
gtttagatatatgctgtcaggtatttttattatataaacagctaagtttttatttatcgacaaaataaacaacttgagttaatatagatgctcatccata |
220 |
Q |
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| T |
42519628 |
gtttagatatatgctgtcaggtatttttattatataaacagctaagtttttatttatcgacaaaataaacaacttgagttaatatagatgctcatccata |
42519727 |
T |
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| Q |
221 |
tttcgatcaaaagtttaaaataataacatatattcttagatagacataaa |
270 |
Q |
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| T |
42519728 |
tttctatcaaaagtttaaaataataacatatattcttagatagacataaa |
42519777 |
T |
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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 1241520 - 1241595
Alignment:
| Q |
199 |
ttaatatagatgctcatccatatttcgatcaaaagtttaaaataataa---catatattcttaga-tagacataaa |
270 |
Q |
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| T |
1241520 |
ttaatatagatgctcatccatatttcgatcaaaagtttaaaataataatagtatatattcttagagtagacataaa |
1241595 |
T |
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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 42519507 - 42519560
Alignment:
| Q |
1 |
tcctgtatagtcttttccagagccttgtgctacgtaacctccagccattgtgtt |
54 |
Q |
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| T |
42519507 |
tcctggatattcttttccagagccttgtgctatgtaacctccagccattgtgtt |
42519560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 1241285 - 1241333
Alignment:
| Q |
11 |
tcttttccagagccttgtgctacgtaacctccagccattgtgttctttc |
59 |
Q |
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| T |
1241285 |
tctttttcagagccatgtgctatgtaacctccagccattgtgttctttc |
1241333 |
T |
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Target: scaffold0200 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 222 - 270
Alignment:
| Q |
11 |
tcttttccagagccttgtgctacgtaacctccagccattgtgttctttc |
59 |
Q |
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| T |
222 |
tctttttcagagccatgtgctatgtaacctccagccattgtgttgtttc |
270 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 41972914 - 41972962
Alignment:
| Q |
11 |
tcttttccagagccttgtgctacgtaacctccagccattgtgttctttc |
59 |
Q |
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| T |
41972914 |
tctttttcagagccatgtgctatgtaacctccagccattgtgttgtttc |
41972962 |
T |
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