View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_low_8 (Length: 667)

Name: NF17166_low_8
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_low_8
NF17166_low_8
[»] chr6 (19 HSPs)
chr6 (354-550)||(2986761-2986957)
chr6 (148-348)||(2987015-2987228)
chr6 (354-550)||(2928127-2928318)
chr6 (354-519)||(2935663-2935828)
chr6 (389-546)||(2952983-2953140)
chr6 (148-348)||(2985959-2986155)
chr6 (552-652)||(3002848-3002960)
chr6 (592-652)||(2954967-2955027)
chr6 (592-652)||(2986612-2986672)
chr6 (592-649)||(2952838-2952895)
chr6 (592-646)||(2974890-2974944)
chr6 (442-491)||(2955324-2955373)
chr6 (474-546)||(2955220-2955292)
chr6 (592-633)||(2935508-2935549)
chr6 (596-649)||(2965404-2965457)
chr6 (508-553)||(3002775-3002820)
chr6 (592-652)||(2927989-2928051)
chr6 (384-486)||(2985775-2985878)
chr6 (594-631)||(2983761-2983798)
[»] scaffold0024 (5 HSPs)
scaffold0024 (356-553)||(43204-43401)
scaffold0024 (445-546)||(33991-34092)
scaffold0024 (592-649)||(34180-34237)
scaffold0024 (261-348)||(33739-33829)
scaffold0024 (299-348)||(43082-43131)
[»] chr7 (3 HSPs)
chr7 (354-520)||(3340056-3340223)
chr7 (592-652)||(3339881-3339941)
chr7 (248-282)||(3340362-3340396)
[»] chr8 (1 HSPs)
chr8 (357-387)||(7473110-7473140)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 2e-66; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 354 - 550
Target Start/End: Complemental strand, 2986957 - 2986761
Alignment:
354 taatcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactca 453  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||| ||   | |||||||| |||    
2986957 taataaatttaccatttactcaagtgttgcactctcttattttatcgatgttcctcttctttttcaattatataaactaaatttcgtcaattcacattca 2986858  T
454 aaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaactca 550  Q
    ||| |||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||||||||||||    
2986857 aaaataattttgatttaaattatccaaacaacttgaataatgataaatcacttttcaattaaggtatcaaaacataaatcatgttacattaaactca 2986761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 148 - 348
Target Start/End: Complemental strand, 2987228 - 2987015
Alignment:
148 tttaagtaaaatggagagtgagagcataaatgtagggatatatgataaaaa-----taattaatgtggtgcttttttggttgtga-------gttggaag 235  Q
    |||||||||||||||| ||||||||||||||||| ||||||||| ||||||     |||||||||| ||||||||||||||||||       ||||||||    
2987228 tttaagtaaaatggagggtgagagcataaatgtaaggatatatggtaaaaaaataataattaatgtcgtgcttttttggttgtgacttgtgagttggaag 2987129  T
236 acatgcgacgtaagttcacaagatcaaacgtgagttatgtactaaatcaacttgtc-gtggaaactctaaataattttaagtgattgttgttcgaaaatc 334  Q
    |||   ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||| ||| ||    
2987128 acacttgacgtaagttcacaagatcaaacgtgagttatgtactaaatcaacttgtcaatggaaactgttaataattttaagtgattgttgttccaaattc 2987029  T
335 gattcaaggttgga 348  Q
    ||||||||||||||    
2987028 gattcaaggttgga 2987015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 354 - 550
Target Start/End: Complemental strand, 2928318 - 2928127
Alignment:
354 taatcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactca 453  Q
    ||||||||||||||||||||||||     |||||||||||||| |  | || |||||||||||| ||||||| |||| | |||   | ||||||||||||    
2928318 taatcaatttaccatttactcaag-----cactctcttattttattaacgtgcctcttcttttttaatcattcaaaccagttttggtaaattcacactca 2928224  T
454 aaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaactca 550  Q
    |||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| ||| ||||| |||| |||  |||||||||    
2928223 aaagtaattttgatctaaattatctaaacaacttgaattatgaaaaatcacttttcaatcaaggtatcaaaacataagtcaccttaacttaaactca 2928127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 354 - 519
Target Start/End: Complemental strand, 2935828 - 2935663
Alignment:
354 taatcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactca 453  Q
    |||||||||||||||||| ||||||||| || | ||||||||| | || ||||||||||||||| ||||||| ||||   |||  || |||||||| |||    
2935828 taatcaatttaccatttagtcaagtgtttcattgtcttattttattgacgttcctcttcttttttaatcattcaaacgcgttttgataaattcacattca 2935729  T
454 aaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggta 519  Q
    |||  ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||    
2935728 aaaacaattttgatctaaattatccaaacaacatgaattatgaaaaatcacttttcaatcaaggta 2935663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 389 - 546
Target Start/End: Complemental strand, 2953140 - 2952983
Alignment:
389 cttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactcaaaagtaatttggatctaaattatccaaacaacttg 488  Q
    |||||||| | |||||||||||||||||| ||||||| |||||| |||  || ||||||| || ||||||||||| |||||||||| |||||||||||||    
2953140 cttattttatggatgttcctcttcttttttaatcattcaaactagttttgataaattcactcttaaaagtaattttgatctaaattctccaaacaacttg 2953041  T
489 aataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaa 546  Q
    ||| |||||||||||||||||||| ||| |||  || ||||||||| | |||||||||    
2953040 aattatgaaaaatcacttttcaatcaagatatccaaacataaatcatgatacattaaa 2952983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 148 - 348
Target Start/End: Complemental strand, 2986155 - 2985959
Alignment:
148 tttaagtaaaatgga-gagtgagagcataaatgtagggatatatgataaaaataattaatgtggtgcttttttggttgtgagttggaagacatgcgacgt 246  Q
    ||||||||||||||| ||||||||  |||||||||||| ||||||| |||||  ||    || |||||| ||||||||||||||||||| ||   |||||    
2986155 tttaagtaaaatggaagagtgagactataaatgtaggggtatatgaaaaaaaagat----gtcgtgcttgtttggttgtgagttggaaggcacttgacgt 2986060  T
247 aagttcacaagatcaaacgtgagttatgtactaaatcaacttgtcgtggaaactctaaataattttaagtgattgttgttcgaaaatcgattcaaggttg 346  Q
    ||||||| | | ||||||| ||||||||| ||||||||| ||||  |||  ||||||| |||||||| ||||||||||||| ||| | |||| |||||||    
2986059 aagttcatagggtcaaacgagagttatgttctaaatcaaattgt-ttggggactctaactaattttatgtgattgttgttccaaactggatttaaggttg 2985961  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 552 - 652
Target Start/End: Original strand, 3002848 - 3002960
Alignment:
552 ttcattcaaaaacaattattatcaccgtggaaccaaacacac------------attagtttggagtttctacctgcacccctagattttgccatccaca 639  Q
    ||||||||||||||||| |||||||||||||||||||| |||            ||||||||| |||||||||||||||||||||||||||||| |||||    
3002848 ttcattcaaaaacaattgttatcaccgtggaaccaaacgcacgcgagacacgacattagtttgaagtttctacctgcacccctagattttgccaaccaca 3002947  T
640 ctatcagacccat 652  Q
    |||||||||||||    
3002948 ctatcagacccat 3002960  T

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Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 592 - 652
Target Start/End: Complemental strand, 2955027 - 2954967
Alignment:
592 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacccat 652  Q
    ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||    
2955027 acattagttaggagtttctacctgcaaccctagattttgccaaccacactatcagacccat 2954967  T

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Target: chr6; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 592 - 652
Target Start/End: Complemental strand, 2986672 - 2986612
Alignment:
592 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacccat 652  Q
    ||||||||| ||||||||||  |||||||||||||||||||| ||||||||||||||||||    
2986672 acattagttaggagtttctagttgcacccctagattttgccaaccacactatcagacccat 2986612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 592 - 649
Target Start/End: Complemental strand, 2952895 - 2952838
Alignment:
592 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacc 649  Q
    ||||||||| ||| |||||||||||||||||||||||||||| | |||||||||||||    
2952895 acattagttaggaatttctacctgcacccctagattttgccaacaacactatcagacc 2952838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 592 - 646
Target Start/End: Complemental strand, 2974944 - 2974890
Alignment:
592 acattagtttggagtttctacctgcacccctagattttgccatccacactatcag 646  Q
    ||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||    
2974944 acattagttaggagtttctacctgcacccctagatttttccaacaacactatcag 2974890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 491
Target Start/End: Complemental strand, 2955373 - 2955324
Alignment:
442 aattcacactcaaaagtaatttggatctaaattatccaaacaacttgaat 491  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||||||||    
2955373 aattcacattcagaagtaattttgatctaaattatccaaacaacttgaat 2955324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 474 - 546
Target Start/End: Complemental strand, 2955292 - 2955220
Alignment:
474 tatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaa 546  Q
    ||||||||  |||||||| ||||||||||||||||||||||||||||   | ||||||| | |||||||||||    
2955292 tatccaaaacacttgaattatgaaaaatcacttttcaattaaggtatcctaacataaattatgttacattaaa 2955220  T

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Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 633
Target Start/End: Complemental strand, 2935549 - 2935508
Alignment:
592 acattagtttggagtttctacctgcacccctagattttgcca 633  Q
    |||||||||  |||||||||||||||||||||||||||||||    
2935549 acattagttatgagtttctacctgcacccctagattttgcca 2935508  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 596 - 649
Target Start/End: Complemental strand, 2965457 - 2965404
Alignment:
596 tagtttggagtttctacctgcacccctagattttgccatccacactatcagacc 649  Q
    ||||| |||||||||||||| | ||||||||||||||| | |||||||||||||    
2965457 tagttaggagtttctacctgaaaccctagattttgccaacaacactatcagacc 2965404  T

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Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 553
Target Start/End: Original strand, 3002775 - 3002820
Alignment:
508 tcaattaaggtattaaatcataaatcacgttacattaaactcattt 553  Q
    ||||||||||||||||| ||||||||| |||||| |||||||||||    
3002775 tcaattaaggtattaaaacataaatcatgttacactaaactcattt 3002820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 652
Target Start/End: Complemental strand, 2928051 - 2927989
Alignment:
592 acattagtttggagtttctacctgcacccctaga--ttttgccatccacactatcagacccat 652  Q
    ||||||||  |||||||||||||||||||| |||  |||||||| |||| |||||||||||||    
2928051 acattagtcaggagtttctacctgcaccccaagattttttgccaaccacgctatcagacccat 2927989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 486
Target Start/End: Complemental strand, 2985878 - 2985775
Alignment:
384 actctcttattttgtcgatgttcctcttct-ttttcaatcatttaaactaatttgtattaattcacactcaaaagtaatttggatctaaattatccaaac 482  Q
    ||||||||||||  | |||| ||||||||| |||| ||||||| |||||| |||   | ||| ||||||||| |||||||| ||| ||||||| ||||||    
2985878 actctcttatttgattgatgctcctcttctttttttaatcattcaaactagttttggtaaatgcacactcaagagtaatttcgatttaaattacccaaac 2985779  T
483 aact 486  Q
    ||||    
2985778 aact 2985775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 594 - 631
Target Start/End: Complemental strand, 2983798 - 2983761
Alignment:
594 attagtttggagtttctacctgcacccctagattttgc 631  Q
    ||||||| ||||||| ||||||||||||||||||||||    
2983798 attagttaggagtttttacctgcacccctagattttgc 2983761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 106; Significance: 1e-52; HSPs: 5)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 356 - 553
Target Start/End: Original strand, 43204 - 43401
Alignment:
356 atcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttcaatcatttaaactaatttgtattaattcacactcaaa 455  Q
    ||||||| ||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||| |||||| |||  || |||||||||| |||    
43204 atcaattcaccatttactcaagtgttgcagtctcttattttattgatgttcctcttctttttcaatcattcaaactagttttgataaattcacacttaaa 43303  T
456 agtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacattaaactcattt 553  Q
    ||| |||| |||| |||||||||||||||||||||| ||||||||||| |||||||| ||| |||| || |||||||||  ||| |||||| ||||||    
43304 agtcatttcgatcaaaattatccaaacaacttgaattatgaaaaatcatttttcaatcaagatattcaaacataaatcatattatattaaagtcattt 43401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 445 - 546
Target Start/End: Original strand, 33991 - 34092
Alignment:
445 tcacactcaaaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtattaaatcataaatcacgttacatta 544  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| ||| |||  ||  |||||||| |||||||||    
33991 tcacactcaaaagtaattttgatctaaattatccaaataacttgaattatgaaaaatcacttttcaatcaagctatccaaatataaatcatgttacatta 34090  T
545 aa 546  Q
    ||    
34091 aa 34092  T

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Target: scaffold0024; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 592 - 649
Target Start/End: Original strand, 34180 - 34237
Alignment:
592 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacc 649  Q
    |||||| || ||||||||||| ||||||| |||||||||||| | |||||||||||||    
34180 acattacttaggagtttctacttgcacccgtagattttgccaacaacactatcagacc 34237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 261 - 348
Target Start/End: Original strand, 33739 - 33829
Alignment:
261 aaacgtgagttatgtact----aaatcaacttgtcgtggaaactctaaataattttaagtgattgttgttcgaaaatcgattcaaggttgga 348  Q
    ||||||||||||||||||    ||||||||||||  ||||  ||||  || |||||| ||||||||||||| |||||||||| |||||||||    
33739 aaacgtgagttatgtacttaataaatcaacttgtt-tggatgctctttatcattttacgtgattgttgttccaaaatcgatttaaggttgga 33829  T

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Target: scaffold0024; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 348
Target Start/End: Original strand, 43082 - 43131
Alignment:
299 ctctaaataattttaagtgattgttgttcgaaaatcgattcaaggttgga 348  Q
    |||| |||||||||| ||||||||||||| |||||| ||| |||||||||    
43082 ctcttaataattttatgtgattgttgttccaaaatcaatttaaggttgga 43131  T

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Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 354 - 520
Target Start/End: Complemental strand, 3340223 - 3340056
Alignment:
354 taatcaatttaccatttactcaagtgttgcactctcttattttgtcgatgttcctcttctttttc-aatcatttaaactaatttgtattaattcacactc 452  Q
    ||||||||||| |||||| |||||||||||||||||||||||| | || |||||| ||||||||  ||||||| |||| | |||  || |||||||||||    
3340223 taatcaatttatcatttagtcaagtgttgcactctcttattttattgacgttccttttctttttttaatcattaaaaccagttttgataaattcacactc 3340124  T
453 aaaagtaatttggatctaaattatccaaacaacttgaataatgaaaaatcacttttcaattaaggtat 520  Q
    |||||||||||  |||||||||||||||||||||||||| ||||||| | |||||||||| |||||||    
3340123 aaaagtaattttaatctaaattatccaaacaacttgaattatgaaaatttacttttcaatcaaggtat 3340056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 592 - 652
Target Start/End: Complemental strand, 3339941 - 3339881
Alignment:
592 acattagtttggagtttctacctgcacccctagattttgccatccacactatcagacccat 652  Q
    ||||||||| ||||||||||| |||||||||||||||||||| ||| | ||||||||||||    
3339941 acattagttaggagtttctacatgcacccctagattttgccaaccatattatcagacccat 3339881  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 248 - 282
Target Start/End: Complemental strand, 3340396 - 3340362
Alignment:
248 agttcacaagatcaaacgtgagttatgtactaaat 282  Q
    |||||||| ||||||||||||||||||||||||||    
3340396 agttcacatgatcaaacgtgagttatgtactaaat 3340362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 387
Target Start/End: Complemental strand, 7473140 - 7473110
Alignment:
357 tcaatttaccatttactcaagtgttgcactc 387  Q
    |||||||||||||||||||||||||||||||    
7473140 tcaatttaccatttactcaagtgttgcactc 7473110  T

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