View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_80 (Length: 283)
Name: NF17166_low_80
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_80 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 27446300 - 27446047
Alignment:
| Q |
20 |
aatttatccaacataggttcccagatgcttaaaaggaatagcgccttgactacaatttaagaaattacaagccatctccaaaagttgattaggaacatta |
119 |
Q |
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| T |
27446300 |
aatttatccaacataggttcccagatgcttaaaaggaatagcgccttgactacaatttaagaaattacaagccatctccaaaagttgattaggaacatta |
27446201 |
T |
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| Q |
120 |
acccccattaactattccaaataataactttgaagtcggacaccatctcaaaacctctcgaacgagcattcatagtccaagattctgcactgatgcttca |
219 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27446200 |
acccccatcaactattccaaataataactttgaagtcggacaccatctcaaaacctctcgaacgagcattcatagtccaagattctgcactgatgcttca |
27446101 |
T |
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| Q |
220 |
cctattcaaagaatgtcatctgcgtattgttaatgagaaatagacatccctttg |
273 |
Q |
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| T |
27446100 |
cctattcaaagaatgtcatcagcgtattgttaatgagaaatagacatccctttg |
27446047 |
T |
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