View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_82 (Length: 279)
Name: NF17166_low_82
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_82 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 142 - 270
Target Start/End: Complemental strand, 18697859 - 18697731
Alignment:
| Q |
142 |
tgaaatggtataatcctttcaaataatattcacatggcaacgaggatttaatgacttttcaaatgactaaactttcccttagacatttcaaggaaaaagc |
241 |
Q |
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| T |
18697859 |
tgaaatggtataatcctttcaaataatattcacatggcaactatgatttaatgacttttcaaatgactaaactttccattggatgtttcaaggaacaagc |
18697760 |
T |
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| Q |
242 |
ggaggaatcaaagaggttaagagtgcaac |
270 |
Q |
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| T |
18697759 |
ggaggaatcaaagaggttaagagtgcaac |
18697731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 40160907 - 40160801
Alignment:
| Q |
51 |
cagaggttgtggccgaagaacgtaagaagctccttgatcaaaaatcaattatattgagaagaggaaagaagaactagaactaacagcttcttgaaatggt |
150 |
Q |
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|||||||||||||| |||||| |||| |||||||| || |||||| || ||||||||| |||||||| |||| ||||| ||||||||||||| ||| |
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| T |
40160907 |
cagaggttgtggccaaagaacacaagaggctccttgctcgaaaatccat--tattgagaaaaggaaagaggaacaagaac-ggcagcttcttgaaaaggt |
40160811 |
T |
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| Q |
151 |
ataatccttt |
160 |
Q |
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|||||||||| |
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| T |
40160810 |
ataatccttt |
40160801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 53
Target Start/End: Complemental strand, 33946639 - 33946599
Alignment:
| Q |
13 |
cagagtcttgaggctgatggtttaagggatcacttggccag |
53 |
Q |
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| T |
33946639 |
cagagtcttgaggctgatggcttaagggatcacttggccag |
33946599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 18698027 - 18697989
Alignment:
| Q |
15 |
gagtcttgaggctgatggtttaagggatcacttggccag |
53 |
Q |
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| T |
18698027 |
gagtcttgaggctgatggtttaagggataacttggccag |
18697989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 18697899 - 18697864
Alignment:
| Q |
51 |
cagaggttgtggccgaagaacgtaagaagctccttg |
86 |
Q |
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| T |
18697899 |
cagaggttgtggccgaagaacgtaaaaagctccttg |
18697864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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