View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_83 (Length: 278)
Name: NF17166_low_83
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_83 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 15 - 278
Target Start/End: Original strand, 36885006 - 36885269
Alignment:
| Q |
15 |
tatgagaattgataattttccccctttaagtacaatagggaaaatagaaaacaaacagattgttagccttcctgcctaaagtcaaatttttggtaggtta |
114 |
Q |
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| T |
36885006 |
tatgagaattgataattttccccctttaagtacaatagggaaaatagaaaacaaacagattgttagccttcctgcctaaagtcaaatttttggtaggtta |
36885105 |
T |
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| Q |
115 |
aagatcaatttctaaatgacactaaacacaaattgaacaggcataagataactcatacaatcggccaggaaaaccaagtagcctagtatattactatatt |
214 |
Q |
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| T |
36885106 |
aagatcaatttctaaatgacactaaacacaaattgaacaggcataagataactcatacaatcggccatgaaaaccaagtagcctagtatattactatatt |
36885205 |
T |
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| Q |
215 |
tccatcattcttttcgcaaaattgaccaagcaattttcttaacacagagtaggtattgaaaatc |
278 |
Q |
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| T |
36885206 |
tccatcattcttttcgcaaaattgaccaagcaattttcttaacacagagtaggtattgaaaatc |
36885269 |
T |
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Target: chr1 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 76 - 254
Target Start/End: Complemental strand, 20089205 - 20089036
Alignment:
| Q |
76 |
gttagccttcctgcctaaagtcaaatttttggtaggttaaagatcaatttctaaatgacactaaacacaaattgaacaggcataagataactcatacaat |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |
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| T |
20089205 |
gttagccttcctgcctaaagtcaaatttttggtaggttaa-gatcaatttctaaatgacactaaacataaattgaacagacataagataactcagacaat |
20089107 |
T |
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| Q |
176 |
cggccaggaaaaccaagtagcctagtatattactatatttccatcattcttttcgcaaaattgaccaagcaattttctt |
254 |
Q |
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| T |
20089106 |
cgtcgaagaaaaccaagtagcctagta--------tatttccatcattcatttcgcaaaattgaccaagcaattttctt |
20089036 |
T |
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