View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_84 (Length: 275)
Name: NF17166_low_84
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_84 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: scaffold0169 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 275
Target Start/End: Complemental strand, 26313 - 26047
Alignment:
| Q |
9 |
attatactaatttatatttttcaacaagtatgatattgcttggctatagaaaatgagcatggatactacaaacatttgattagaaaaccaatctttaaag |
108 |
Q |
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| T |
26313 |
attatactaatttatatttttcaacaagtatgatattgcttggctatagaaaatgagcatggatactacaaacatttgattagaaaaccaatctttaaag |
26214 |
T |
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| Q |
109 |
gtaaaagagaagacgacattgcaacgactttcctgtattctcaatttctcatcaaaatataaatagataaattcaaatcattaggaaaagaactatttca |
208 |
Q |
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| T |
26213 |
gtaaaagagaagacgacattgcaacgactttcctgtattctcaatttctcatcaaaatataaatagataaattcaaatcattaggaaaagaactatttca |
26114 |
T |
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| Q |
209 |
cttagccaacaagccattttggctgtaattttgaaccttgtgtaccaggtcctaattaaaaagtttg |
275 |
Q |
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| T |
26113 |
cttagccaacaagccattttggctgtaattttgaaccttgtgtaccaggtcctaattaaaaagtttg |
26047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 255
Target Start/End: Complemental strand, 4443444 - 4443214
Alignment:
| Q |
9 |
attatactaatttatatttttcaacaagtatgatattgcttggctatagaaaatgagcatggatactacaaacatttgattagaaaaccaatctttaaag |
108 |
Q |
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| T |
4443444 |
attatactaatttatatttttcaacgagtatgatggtgcttg-ctatagataatgagagtggacactacaaacat--gatttgaaagtcaatctttaaag |
4443348 |
T |
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| Q |
109 |
gtaaaagagaagacgacattgcaacgactttcctgtattctcaatttctcatcaaaatataaatagataaattcaaatcattaggaaaagaactatttca |
208 |
Q |
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| T |
4443347 |
gttaaaat-----cgacatttcaacgactttcttgtgttctcc--------tcaaaatacaaatagataaattcaaatcaataggaaaagaactatttca |
4443261 |
T |
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| Q |
209 |
cttagccaacaagccattttggctgtaattttgaaccttgtgtacca |
255 |
Q |
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| T |
4443260 |
cttagccaacaagccatcttggctgtaatattgaaccttgtgtacca |
4443214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 264
Target Start/End: Complemental strand, 4467386 - 4467317
Alignment:
| Q |
195 |
aaagaactatttcacttagccaacaagccattttggctgtaattttgaaccttgtgtaccaggtcctaat |
264 |
Q |
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| T |
4467386 |
aaagacctatttcacttggccaacaagccatcttggttgtaattttgaaccttatgtaccacgttctaat |
4467317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 266
Target Start/End: Complemental strand, 4445575 - 4445500
Alignment:
| Q |
189 |
ttaggaaaagaactatttcacttagccaacaagccattttggctgtaattttgaaccttgtgtaccaggtcctaatta |
266 |
Q |
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| T |
4445575 |
ttagggaaagaattgtttcacttagccaacaagccctattggctgta--tttgaaccttatgttccatgtcctaatta |
4445500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 8365231 - 8365309
Alignment:
| Q |
73 |
actacaaacatttgattagaaaaccaatctttaaaggtaaaagagaaga-cgacattgcaacgactttcctgtattctc |
150 |
Q |
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| T |
8365231 |
actacaaacatgtgattagaaagccattttttaaagttaaaagagaagatcaacatttcaatggctttcctgtattctc |
8365309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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