View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17166_low_96 (Length: 250)
Name: NF17166_low_96
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17166_low_96 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 21438230 - 21437998
Alignment:
| Q |
20 |
agtgtgtccaccaaatgagaaatacccatgattccaaatttctataattctatttgtaaacttgcaattgagtagta---caatcaaatcccaaccgttg |
116 |
Q |
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|||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21438230 |
agtgtgtccaccaaatgagaaatattcatgatagcaaatttctatcattctatttgtaaacttgcaattgagtagtagtacaatcaaatcccaaccgttg |
21438131 |
T |
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| Q |
117 |
aattaacaaagtggaagacactttgaacnnnnnnnccttattccttgttacactcattcttagtcaacactttgtcagctttcccagtaaagagaaacac |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21438130 |
aattaacaaagtggaagacactttgaacaaaaaa-ccttattccttgttacactcattcttagtcaacactttgtcagctttcccagtaaagagaaacac |
21438032 |
T |
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| Q |
217 |
acaaagcctctttcttcaacttctcacttcactt |
250 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
21438031 |
acaaagcctctttcttcaacttctcacttcactt |
21437998 |
T |
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