View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17166_low_98 (Length: 250)

Name: NF17166_low_98
Description: NF17166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17166_low_98
NF17166_low_98
[»] chr2 (3 HSPs)
chr2 (106-191)||(39424832-39424921)
chr2 (9-68)||(39424919-39424978)
chr2 (188-238)||(39424635-39424686)


Alignment Details
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 191
Target Start/End: Complemental strand, 39424921 - 39424832
Alignment:
Q  106 agacaaaatttgccaacacattctgtt----gtaaatgaattaacagtgttcatgtaattagcttcaaactcttgctaattcttgtaaat 191  Q
    |||||||| ||||||||||||||||||    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39424921 agacaaaacttgccaacacattctgtttgttgtaaatgaattaacagtgttcatgtagttagcttcaaactcttgctaattcttgtaaat 39424832  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 39424978 - 39424919
Alignment:
Q  9 agggatctacttaacaacattgatgatcgtataatcgagctgaagagacagaacggcaga 68  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39424978 agggatctacttaacaacattgatgatcgtataatagagctgaagagacagaacggcaga 39424919  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 39424686 - 39424635
Alignment:
Q  188 aaatgtgagtctgagagttggtctgcatttt-agatgaaaatgcaatatctg 238  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39424686 aaatgtgagtctgagagttggtctgcattttaagatgaaaatgcaatatctg 39424635  T

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