View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17167_high_1 (Length: 784)

Name: NF17167_high_1
Description: NF17167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17167_high_1
NF17167_high_1
[»] chr7 (7 HSPs)
chr7 (366-784)||(8028279-8028697)
chr7 (386-566)||(13949263-13949443)
chr7 (214-351)||(8029418-8029555)
chr7 (214-386)||(13948999-13949167)
chr7 (146-216)||(8029601-8029671)
chr7 (119-216)||(13948871-13948969)
chr7 (217-306)||(35346184-35346272)
[»] chr1 (5 HSPs)
chr1 (383-566)||(35163700-35163883)
chr1 (217-306)||(4010576-4010665)
chr1 (346-386)||(35163567-35163607)
chr1 (729-773)||(51389453-51389497)
chr1 (18-66)||(20603947-20603996)
[»] chr5 (4 HSPs)
chr5 (383-567)||(30904012-30904196)
chr5 (216-381)||(30904295-30904456)
chr5 (217-306)||(39344732-39344820)
chr5 (88-216)||(30904483-30904609)
[»] chr8 (6 HSPs)
chr8 (395-566)||(1601502-1601672)
chr8 (214-386)||(1603031-1603199)
chr8 (445-566)||(1661170-1661291)
chr8 (120-215)||(1603230-1603326)
chr8 (729-784)||(770558-770613)
chr8 (346-378)||(1661411-1661443)
[»] chr2 (2 HSPs)
chr2 (214-386)||(44368517-44368685)
chr2 (120-215)||(44368716-44368812)
[»] chr4 (1 HSPs)
chr4 (571-727)||(27349915-27350070)
[»] scaffold0405 (2 HSPs)
scaffold0405 (626-727)||(14328-14429)
scaffold0405 (571-611)||(14428-14468)
[»] chr6 (1 HSPs)
chr6 (217-306)||(2273245-2273333)
[»] chr3 (3 HSPs)
chr3 (234-362)||(40959324-40959448)
chr3 (236-362)||(40973868-40973990)
chr3 (18-66)||(8505582-8505631)


Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 366 - 784
Target Start/End: Complemental strand, 8028697 - 8028279
Alignment:
Q  366 caaaagagaccaattgactatagatactatactttattattcattttacatcttttatcagaacaactccttacaagttttactcactatcgggcttcca 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  8028697 caaaagagaccaattgactatagatactatactttattattcattttacatcttttatcataacaactccttacaagttttactcactatcaggcttcca 8028598  T
Q  466 aatctctattgatcatttctcttgaaatcctctgattactaagaagctaatcatgtgttaaattattatgacagcggagaccaagattttgttgtgccat 565  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8028597 aatctctattgatcatttctcttgaaatcctcttattactaagaagctaatcatgtgttaaattattatgacagcggagaccaagattttgttgtgccac 8028498  T
Q  566 taggagcaagatgcgatacatttcggagctcgaacacaaggttcagactctgcacactgaagccactacactttctgcacaacttactttgttgcaggtg 665  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||    
T  8028497 taggagcaagatgcgatacatttcggagctagaacacaaggttcagactctgcacactgaagccactatattttctgcaaaacttactttgttgcaggtg 8028398  T
Q  666 tgaacatttatttatgtttgtgaaaccgtgttttagtttggtaatttgagcttagtttctttctttatggattttcatttgcgaggatttaagcccctgg 765  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8028397 tgaacatttatttatgtttgtgaaaccgtgttttagtttggtaatttgagcttagtttctttctttatggattttcatttgcgaggatttaagcccctgg 8028298  T
Q  766 tttgggttgtttgctgact 784  Q
    |||||||||||||||||||    
T  8028297 tttgggttgtttgctgact 8028279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 386 - 566
Target Start/End: Original strand, 13949263 - 13949443
Alignment:
Q  386 tagatactatactttattattcattttacatcttttatcagaacaactccttacaagttttactcactatcgggcttccaaatctctattgatcatttct 485  Q
    ||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| || ||||||||||||||| || |||||||||    
T  13949263 tagatactatactttattattcattttacatcttttatccgaatgactccttacaagttttactcactctcaggcttccaaatctctgttaatcatttct 13949362  T
Q  486 cttgaaatcctctgattactaagaagctaatcatgtgttaaattattatgacagcggagaccaagattttgttgtgccatt 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||    
T  13949363 cttgaaatcctctgattactaagaagctaatcatgtgttaaattattatgacagcagagaccaagattcagttgtgccatt 13949443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 214 - 351
Target Start/End: Complemental strand, 8029555 - 8029418
Alignment:
Q  214 tagtgatctgatgtctaatctgcactttttctttattgcagtgttttaaattacagtgatacagatcctgacattaatatgcttccaattctcaaaacgg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8029555 tagtgatctgatgtctaatctgcactttttctttattgcagtgttttaaattacagtgatacagatcccgacattaatatgcttccaattctcaaaacgg 8029456  T
Q  314 attgttcaaaaccatattccagcagtatgtgttttcag 351  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  8029455 attgttcaaaaccatattccagcagcatgggttttcag 8029418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 214 - 386
Target Start/End: Original strand, 13948999 - 13949167
Alignment:
Q  214 tagtgatctgatgtctaatctgcactttttctttattgcagtgttttaaattacagtgatacagatcctgacattaatatgcttccaattctcaaaacgg 313  Q
    |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||| ||||||    
T  13948999 tagtgatctgatgtctgatatgcactttttctttattgcagtgttttaaattacagtgatacaaaacctaacattaatatgcttccaattctc-aaacgg 13949097  T
Q  314 attgttcaaaaccatattccagcagtatgtgttttcaggtaattaatttcaacaaaagagaccaattgactat 386  Q
    |||||||||||| ||||||   ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13949098 attgttcaaaacaatattc---cagtatgggttttcaggtaattaatttcaacaaaagagaccaattgactat 13949167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 8029671 - 8029601
Alignment:
Q  146 ttcatttgcttgaattttgataattgaatttttaaacttacttgaaatcttcaccgctataatcataatag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8029671 ttcatttgcttgaattttgataattgaatttttaaacttacttgaaatcttgaccgctataatcataatag 8029601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 13948871 - 13948969
Alignment:
Q  119 taaataatcatcgtctttcatgttgatttcatttgcttgaattttgataattga-atttttaaacttacttgaaatcttcaccgctataatcataatag 216  Q
    |||| |||||| | |||||||||||||||  ||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||||||||||    
T  13948871 taaacaatcattgcctttcatgttgattttgtttgcttgaattttgataattgagattttcaaacttacttgaaatcttgactgctataatcataatag 13948969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 217 - 306
Target Start/End: Original strand, 35346184 - 35346272
Alignment:
Q  217 tgatctgatgtctaatctgcactttttctttattgcagtgttttaaattacagtgatacagatcctgacattaatatgcttccaattctc 306  Q
    |||||||| ||||  ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  35346184 tgatctgaggtctggtctgcactttt-ctttattgcagtgttttaaattacagtgatacatatcctaacattaatatgctttcaattctc 35346272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 156; Significance: 2e-82; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 383 - 566
Target Start/End: Original strand, 35163700 - 35163883
Alignment:
Q  383 ctatagatactatactttattattcattttacatcttttatcagaacaactccttacaagttttactcactatcgggcttccaaatctctattgatcatt 482  Q
    |||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||| || |||||||||||||||||| ||||||    
T  35163700 ctatagatactatactttattattcattttacatcttttatccgaatgactccttacaagttttactcactctcaggcttccaaatctctattaatcatt 35163799  T
Q  483 tctcttgaaatcctctgattactaagaagctaatcatgtgttaaattattatgacagcggagaccaagattttgttgtgccatt 566  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35163800 tctcttgaaatcctctgattactaagaagctaatcatgtgttaaattattatgacagcggagaccaagatttcgttgtgccatt 35163883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 217 - 306
Target Start/End: Original strand, 4010576 - 4010665
Alignment:
Q  217 tgatctgatgtctaatctgcactttttctttattgcagtgttttaaattacagtgatacagatcctgacattaata-tgcttccaattctc 306  Q
    |||||||| ||||  ||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||    
T  4010576 tgatctgaggtctggtctgcactttt-ctttattgcagtgttttaaattacagtgatacatatcctaacattaatattgctttcaattctc 4010665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 35163567 - 35163607
Alignment:
Q  346 tttcaggtaattaatttcaacaaaagagaccaattgactat 386  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  35163567 tttcaggtaattaatttcaacaaaagagaccaattggctat 35163607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 729 - 773
Target Start/End: Complemental strand, 51389497 - 51389453
Alignment:
Q  729 tttatggattttcatttgcgaggatttaagcccctggtttgggtt 773  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||    
T  51389497 tttatggatttgcatttgcgagaatttaagcccctggtttgggtt 51389453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 20603947 - 20603996
Alignment:
Q  18 tctttgtcaattaggcttttggaacaactattcttta-tttgtgtttttt 66  Q
    ||||||||||| ||||| ||||| ||||||||||||| ||||||||||||    
T  20603947 tctttgtcaataaggctcttggaccaactattctttactttgtgtttttt 20603996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 137; Significance: 4e-71; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 383 - 567
Target Start/End: Complemental strand, 30904196 - 30904012
Alignment:
Q  383 ctatagatactatactttattattcattttacatcttttatcagaacaactccttacaagttttactcactatcgggcttccaaatctctattgatcatt 482  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || |||||||||||||||||||||||||    
T  30904196 ctatagatattatactttattattcattttacatcttttattagaacgactccatacaagttttactcactctcaggcttccaaatctctattgatcatt 30904097  T
Q  483 tctcttgaaatcctctgattactaagaagctaatcatgtgttaaattattatgacagcggagaccaagattttgttgtgccatta 567  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||  ||||||||||||    
T  30904096 tctcttgaaatcttctgaatactaagaagctaatcatgtgttaaattatcacgacagcggagaccaagattccgttgtgccatta 30904012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 216 - 381
Target Start/End: Complemental strand, 30904456 - 30904295
Alignment:
Q  216 gtgatctgatgtctaatctgcactttttctttattgcagtgttttaaattacagtgatacagatcctgacattaatatgcttccaattctcaaaacggat 315  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  30904456 gtgatctgatgtctgatctgcactttttcttcattgcagtgttttaaattacagtgatacagatcctaacattaatatgcttccaattctc-aaacggat 30904358  T
Q  316 tgttcaaaaccatattccagcagtatgtgttttcaggtaattaatttcaacaaaagagaccaattg 381  Q
    |||||||||||||||||   |||||||  |||||||||||||||||||||||||||||||||||||    
T  30904357 tgttcaaaaccatattc---cagtatggattttcaggtaattaatttcaacaaaagagaccaattg 30904295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 217 - 306
Target Start/End: Original strand, 39344732 - 39344820
Alignment:
Q  217 tgatctgatgtctaatctgcactttttctttattgcagtgttttaaattacagtgatacagatcctgacattaatatgcttccaattctc 306  Q
    |||||||| ||||  ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  39344732 tgatctgaggtctggtctgcactttt-ctttattgcagtgttttaaattacagtgatacatatcctaacattaatatgctttcaattctc 39344820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 30904609 - 30904483
Alignment:
Q  88 atatcgtcttaatatagcttataaattactataaataatcatcgtctttcatgttgatttcatttgcttgaattttgataattga-atttttaaacttac 186  Q
    ||||||||||||||||||||||||| ||   |||| |||||| | ||| |||||||||||  || | | || ||||| ||||||| ||||||||||||||    
T  30904609 atatcgtcttaatatagcttataaaata---taaacaatcattgccttacatgttgattttgttcgatcgagttttgctaattgagatttttaaacttac 30904513  T
Q  187 ttgaaatcttcaccgctataatcataatag 216  Q
    |||||||||| || ||||||||||||||||    
T  30904512 ttgaaatcttgactgctataatcataatag 30904483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 9e-66; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 9e-66
Query Start/End: Original strand, 395 - 566
Target Start/End: Complemental strand, 1601672 - 1601502
Alignment:
Q  395 tactttattattcattttacatcttttatcagaacaactccttacaagttttactcactatcgggcttccaaatctctattgatcatttctcttgaaatc 494  Q
    |||||||||||||||||||||||||||||| |||| || |||||||||||||||||||| || || ||||||||||||||| ||||||||||||||||||    
T  1601672 tactttattattcattttacatcttttatccgaacgaccccttacaagttttactcactctcaggtttccaaatctctatt-atcatttctcttgaaatc 1601574  T
Q  495 ctctgattactaagaagctaatcatgtgttaaattattatgacagcggagaccaagattttgttgtgccatt 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||    
T  1601573 ctctgattactaagaagctaatcatgtgttaaattattatgacagtggagaccaagattccgttgtgccatt 1601502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 214 - 386
Target Start/End: Complemental strand, 1603199 - 1603031
Alignment:
Q  214 tagtgatctgatgtctaatctgcactttttctttattgcagtgttttaaattacagtgatacagatcctgacattaatatgcttccaattctcaaaacgg 313  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||    
T  1603199 tagtgatctgatgtttgatatgcactttttctttattgcagtgttttaaattacaatgatacaaatcctaacattaatatgcttccaattctc-aaacgg 1603101  T
Q  314 attgttcaaaaccatattccagcagtatgtgttttcaggtaattaatttcaacaaaagagaccaattgactat 386  Q
    |||||||||||| ||||||   ||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  1603100 attgttcaaaacaatattc---cagtatgggttttcaggtaattaatttcaacaaaagagaccaattggctat 1603031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 445 - 566
Target Start/End: Complemental strand, 1661291 - 1661170
Alignment:
Q  445 ttactcactatcgggcttccaaatctctattgatcatttctcttgaaatcctctgattactaagaagctaatcatgtgttaaattattatgacagcggag 544  Q
    ||||||||| || | |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||    
T  1661291 ttactcactctcagacttccaaatctctattaatcatttctcttgaaatcctctgattactataaagctaatcatgtgttaaattattatgacagtggag 1661192  T
Q  545 accaagattttgttgtgccatt 566  Q
    || ||||||  |||||||||||    
T  1661191 acaaagattccgttgtgccatt 1661170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 1603326 - 1603230
Alignment:
Q  120 aaataatcatcgtctttcatgttgatttcatttgcttgaattttgataattga-atttttaaacttacttgaaatcttcaccgctataatcataata 215  Q
    |||||||||| | |||||||||||||||  |||| |||||||||||||||||| ||||| |||||||||||||||||| || |||||||||||||||    
T  1603326 aaataatcattgcctttcatgttgattttgtttggttgaattttgataattgagattttcaaacttacttgaaatcttgactgctataatcataata 1603230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 729 - 784
Target Start/End: Original strand, 770558 - 770613
Alignment:
Q  729 tttatggattttcatttgcgaggatttaagcccctggtttgggttgtttgctgact 784  Q
    ||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||    
T  770558 tttatggatttgcatttgcgagaatttaagcccctggtttgggttttttgctgact 770613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 346 - 378
Target Start/End: Complemental strand, 1661443 - 1661411
Alignment:
Q  346 tttcaggtaattaatttcaacaaaagagaccaa 378  Q
    |||||||||||||||||||||||||||||||||    
T  1661443 tttcaggtaattaatttcaacaaaagagaccaa 1661411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 5e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 214 - 386
Target Start/End: Complemental strand, 44368685 - 44368517
Alignment:
Q  214 tagtgatctgatgtctaatctgcactttttctttattgcagtgttttaaattacagtgatacagatcctgacattaatatgcttccaattctcaaaacgg 313  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| ||||||    
T  44368685 tagtgatctgatgtttgatatgcactttttctttattgcagtgttttaaattacaatgatacaaatcctaacattaatatgcttccaattctc-aaacgg 44368587  T
Q  314 attgttcaaaaccatattccagcagtatgtgttttcaggtaattaatttcaacaaaagagaccaattgactat 386  Q
    |||||||||||| ||||||   ||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  44368586 attgttcaaaacaatattc---cagtatgggttttcaggtaattaatttcaacaaaagagaccaattggctat 44368517  T

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Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 120 - 215
Target Start/End: Complemental strand, 44368812 - 44368716
Alignment:
Q  120 aaataatcatcgtctttcatgttgatttcatttgcttgaattttgataattga-atttttaaacttacttgaaatcttcaccgctataatcataata 215  Q
    |||||||||| | |||||||||||||||  |||| |||||||||||||||||| ||||| |||||||||||||||||| || |||||||||||||||    
T  44368812 aaataatcattgcctttcatgttgattttgtttggttgaattttgataattgagattttcaaacttacttgaaatcttgactgctataatcataata 44368716  T

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Target: chr4 (Bit Score: 113; Significance: 8e-57; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 571 - 727
Target Start/End: Original strand, 27349915 - 27350070
Alignment:
Q  571 gcaagatgcgatacatttcggagctcgaacacaaggttcagactctgcacactgaagccactacactttctgcacaacttactttgttgcaggtgtgaac 670  Q
    |||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27349915 gcaaaatgcgatatatttcggagctagaacacaaggttcagactctgcagactgaagccactacactttctgcacaacttactttgttgcaggtgggaac 27350014  T
Q  671 atttatttatgtttgtgaaaccgtgttttagtttggtaatttgagcttagtttcttt 727  Q
    | |||||||||||||||||  | ||||||||||||||||||| ||||||||||||||    
T  27350015 a-ttatttatgtttgtgaatgcatgttttagtttggtaatttcagcttagtttcttt 27350070  T

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Target: scaffold0405 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: scaffold0405
Description:

Target: scaffold0405; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 626 - 727
Target Start/End: Complemental strand, 14429 - 14328
Alignment:
Q  626 agccactacactttctgcacaacttactttgttgcaggtgtgaacatttatttatgtttgtgaaaccgtgttttagtttggtaatttgagcttagtttct 725  Q
    |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14429 agccactacactttctgcccaacttactttgttgcaggtgggaacatttatttatgtttgtgaaaccgtgtttttgtttggtaatttgagcttagtttct 14330  T
Q  726 tt 727  Q
    ||    
T  14329 tt 14328  T

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Target: scaffold0405; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 571 - 611
Target Start/End: Complemental strand, 14468 - 14428
Alignment:
Q  571 gcaagatgcgatacatttcggagctcgaacacaaggttcag 611  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  14468 gcaagatgcgatacatttcggagctagaacacaaggttcag 14428  T

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Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 217 - 306
Target Start/End: Original strand, 2273245 - 2273333
Alignment:
Q  217 tgatctgatgtctaatctgcactttttctttattgcagtgttttaaattacagtgatacagatcctgacattaatatgcttccaattctc 306  Q
    |||||||| ||||  ||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||    
T  2273245 tgatctgaggtctggtctgcactttt-ctttattgcagtgttttaaattacagtgatacatatcctaacattaatatgctttcaattctc 2273333  T

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Target: chr3 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 234 - 362
Target Start/End: Complemental strand, 40959448 - 40959324
Alignment:
Q  234 tgcactttttctttattgcagtgttttaaattacagtgatacagatcctgacattaatatgcttccaattctcaaaacggattgttcaaaaccatattcc 333  Q
    ||||| ||||||| ||||||||||||| ||||| ||  | |||||||||||| || ||||||||||||||||| |||||||| |||||||| |||||||     
T  40959448 tgcacattttcttcattgcagtgttttgaattatagcaacacagatcctgacgttgatatgcttccaattctc-aaacggatagttcaaaatcatattc- 40959351  T
Q  334 agcagtatgtgttttcaggtaattaattt 362  Q
      || |||| |||| ||||||||||||||    
T  40959350 --caatatgggtttacaggtaattaattt 40959324  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 362
Target Start/End: Original strand, 40973868 - 40973990
Alignment:
Q  236 cactttttctttattgcagtgttttaaattacagtgatacagatcctgacattaatatgcttccaattctcaaaacggattgttcaaaaccatattccag 335  Q
    ||||||||  || ||| ||||||||||||||||  ||| ||||||  || || ||||| |||||| |||||||| ||||| ||||||||||||||||       
T  40973868 cacttttttattgttgtagtgttttaaattacaacgatgcagatcacgatatcaatatacttccagttctcaaa-cggatagttcaaaaccatattc--- 40973963  T
Q  336 cagtatgtgttttcaggtaattaattt 362  Q
    ||||||| ||||  |||||||||||||    
T  40973964 cagtatgggtttataggtaattaattt 40973990  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 8505631 - 8505582
Alignment:
Q  18 tctttgtcaattaggcttttggaacaactattcttta-tttgtgtttttt 66  Q
    ||||||||||| ||||| ||||| ||||||||||||| ||||||||||||    
T  8505631 tctttgtcaataaggctcttggaccaactattctttactttgtgtttttt 8505582  T

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