View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17167_high_3 (Length: 303)
Name: NF17167_high_3
Description: NF17167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17167_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 43769323 - 43769609
Alignment:
| Q |
19 |
ggacagtgcaatccattgcaaatttagccaaaggacaagacagaggcaatgcagtaactatccaagtaagtta-------ttcaaaacttaacatactga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43769323 |
ggacagtgcaatccattgcaaatttagccaaaggacaagacagaggcaatgcagtaactatccaagtaagttactcaatattcaaaacttaacatactga |
43769422 |
T |
|
| Q |
112 |
acaaaatgcaagttacatttgaaacattttctaacttctaagaaaaataagaagnnnnnnncttctccctttatagacaattaaatctaaagaaaacaat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43769423 |
acaaaatgcaagttacatttgaaacattttctaacttccaagaaaaataagaggtttttttcttctccctttatagacaattaaatcaaaagaaaacaat |
43769522 |
T |
|
| Q |
212 |
atgtggatactgcaagatagctgcacaaattcttacgagtcaatggtggtatatgcacctgcggacattactggtattcaatctgtg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43769523 |
atgtggatactgcaagatagctgcacaaattcttacgagtcaatggtggtatatgcacctgcggatattactggtattcaatctgtg |
43769609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 43779703 - 43779774
Alignment:
| Q |
90 |
tattcaaaacttaacatactgaacaaaatgcaagttacatttgaaacattttctaacttctaagaaaaataa |
161 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43779703 |
tattcaaaactgaacatattgaacaaaatgcaagttacatttaaaacattttctaacttctaagaaaaataa |
43779774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University