View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17167_high_5 (Length: 278)
Name: NF17167_high_5
Description: NF17167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17167_high_5 |
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| [»] scaffold0481 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 4e-84; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 75 - 261
Target Start/End: Complemental strand, 1479836 - 1479646
Alignment:
| Q |
75 |
gccttcaaaggtttcatctttgttattattggttagaatatagttatttgaatttgatgtagtatgctagggtttgggttctgatatgtaagataaa--- |
171 |
Q |
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| T |
1479836 |
gccttcaaaggtttcatctttgttattattggttagaatatagttatttgaatatgatgtattatgcaagggtttgggttctgatatgtaagataaataa |
1479737 |
T |
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| Q |
172 |
-gtaaaggatcgagttgttataaaaatgaatgtaggcaccaaatttcttagtctgatgtgcattaatctgtcagattatacgagcatggtg |
261 |
Q |
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| T |
1479736 |
agtaaaggatcgagttgttttaaaaatgaatgtaggcaccaaatttcttagtctgatgtgcattaatctgtcagattatacgagcatggtg |
1479646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 120 - 258
Target Start/End: Complemental strand, 1472041 - 1471903
Alignment:
| Q |
120 |
atttgaatttgatgtagtatgctagggtttgggttctgatatgtaagataaagtaaaggatcgagttgttataaaaatgaatgtaggcaccaaatttctt |
219 |
Q |
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| T |
1472041 |
atttgaatttgatgtattatgcaagggtttgggttctgatatgtaagataaagtaaaagattgagttgttttaaaaatgaatgtaagcaccaaatttctt |
1471942 |
T |
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| Q |
220 |
agtctgatgtgcattaatctgtcagattatacgagcatg |
258 |
Q |
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| T |
1471941 |
agtctgatgtgcattaatctgtcagattatacgagcatg |
1471903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 120 - 261
Target Start/End: Complemental strand, 1470402 - 1470261
Alignment:
| Q |
120 |
atttgaatttgatgtagtatgctagggtttgggttctgatatgtaagataaagtaaaggatcgagttgttataaaaatgaatgtaggcaccaaatttctt |
219 |
Q |
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| T |
1470402 |
atttgaatttgatgtattatgcaagg-tttgggttctaatatgtaagataaagtaaaggatcgagttgttttaaaaatgaatgtaggcaccaaatttctt |
1470304 |
T |
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| Q |
220 |
agtctgatg-tgcattaatctgtcagattatacgagcatggtg |
261 |
Q |
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| T |
1470303 |
agtctgatgttgcattaatctgtcagattacacgagcatggtg |
1470261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 120 - 261
Target Start/End: Complemental strand, 1477062 - 1476923
Alignment:
| Q |
120 |
atttgaatttgatgtagtat---gctagggtttgggttctgatatgtaagataaagtaaaggatcgagttgttataaaaatgaatgtaggcaccaaattt |
216 |
Q |
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| T |
1477062 |
atttgaatttgatgtattattatgcaagggtttgggttctgatatgttagataaag-----gatcgagctgttttaaaaatgaatgcaggcaccaaattt |
1476968 |
T |
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| Q |
217 |
cttagtctgatgtgcattaatctgtcagattatacgagcatggtg |
261 |
Q |
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| T |
1476967 |
cttagtctgatgtgcattaatctgtcagattatacgagcatggtg |
1476923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 1474906 - 1474772
Alignment:
| Q |
120 |
atttgaatttgatgtagtatgctagggtttgggttctgatatgtaagataaagtaaaggatcgagttgttataaaaatgaatgtaggcaccaaatttctt |
219 |
Q |
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|||||||| | ||||| ||||| | ||||||||||||||| || ||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
1474906 |
atttgaatattatgtattatgcaatggtttgggttctgat------gacaaagtaaaggatcaagttgttttaaaaatgaatgtaggcaccaaatttctt |
1474813 |
T |
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| Q |
220 |
agtctgatgtgcattaatctgtcagattatacgagcatggt |
260 |
Q |
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||||| |||| |||||||||||||||||||||||||||||| |
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| T |
1474812 |
agtctaatgtacattaatctgtcagattatacgagcatggt |
1474772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 1470469 - 1470425
Alignment:
| Q |
79 |
tcaaaggtttcatctttgttattattggttagaatatagttattt |
123 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
1470469 |
tcaaaggtttcatccttgttattattggttagaatttagttattt |
1470425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 1472108 - 1472064
Alignment:
| Q |
79 |
tcaaaggtttcatctttgttattattggttagaatatagttattt |
123 |
Q |
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| T |
1472108 |
tcaaaggtttcatccttgttattattggttagaatttagttattt |
1472064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 1477128 - 1477084
Alignment:
| Q |
79 |
tcaaaggtttcatctttgttattattggttagaatatagttattt |
123 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
1477128 |
tcaaaggttccatccttgttattattggttagaatatagttattt |
1477084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 1474973 - 1474929
Alignment:
| Q |
79 |
tcaaaggtttcatctttgttattattggttagaatatagttattt |
123 |
Q |
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| T |
1474973 |
tcaaaggtttcatccttgttattattggtttgaataaagttattt |
1474929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0481 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0481
Description:
Target: scaffold0481; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 120 - 261
Target Start/End: Original strand, 2576 - 2717
Alignment:
| Q |
120 |
atttgaatttgatgtagtatgctagggtttgggttctgatatgtaagataaagtaaaggatcgagttgttataaaaatgaatgtaggcaccaaatttctt |
219 |
Q |
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|||||||||||||||| ||||| |||||||||||||| ||| || ||||||||||||||||||| ||||| ||||||| |||||| |||||||| ||||| |
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| T |
2576 |
atttgaatttgatgtattatgcaagggtttgggttcttatacgttagataaagtaaaggatcgaattgttttaaaaataaatgtaagcaccaaaattctt |
2675 |
T |
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| Q |
220 |
agtctgatgtgcattaatctgtcagattatacgagcatggtg |
261 |
Q |
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| T |
2676 |
aatctgatgtgcattaatctgtcagattatacgagcatggtg |
2717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0481; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 2509 - 2553
Alignment:
| Q |
79 |
tcaaaggtttcatctttgttattattggttagaatatagttattt |
123 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
2509 |
tcaaaggtttcatctttgttattattggttacaatagcgttattt |
2553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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