View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17167_high_6 (Length: 250)
Name: NF17167_high_6
Description: NF17167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17167_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 38529259 - 38529484
Alignment:
| Q |
7 |
agtgagatgaacagcagttccaatttcaatgcaattacatttgtgaaagttagtatggatggagctccttaccttcgtaaggttgacttgaagatgtaca |
106 |
Q |
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| T |
38529259 |
agtgagaagaacagcagttccaatttcaatgcaattacatttgtgaaagttagtatggatggagctccttaccttcgtaaggttgacttgaagatgtaca |
38529358 |
T |
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| Q |
107 |
caagttactcacagctttctgattccttaggcaaaatgttcagctccttcaccattggtacgtactacattcattaattattaagcttaattttaccttt |
206 |
Q |
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| T |
38529359 |
caagttactcacagctttctgattccttaggcaaaatgttcagctccttcaccattggtacgtaatacattcattagttattaagcttaactttaccttt |
38529458 |
T |
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| Q |
207 |
ctcaatgttgatattgatcattgatt |
232 |
Q |
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| T |
38529459 |
ctcaatgttgatattgatcattgatt |
38529484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 166
Target Start/End: Complemental strand, 33902111 - 33902006
Alignment:
| Q |
61 |
atggatggagctccttaccttcgtaaggttgacttgaagatgtacacaagttactcacagctttctgattccttaggcaaaatgttcagctccttcacca |
160 |
Q |
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| T |
33902111 |
atggatggagcaccttaccttcgtaaggttgacttgacaatgtacaaaacctacaaagatttatctgatgccttagccaaaatgttcagctccttcacca |
33902012 |
T |
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| Q |
161 |
ttggta |
166 |
Q |
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| T |
33902011 |
ctggta |
33902006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 31339409 - 31339295
Alignment:
| Q |
46 |
tttgtgaaagttagtatggatggagctccttaccttcgtaaggttgacttgaagatgtacacaagttactcacagctttctgattccttaggcaaaatgt |
145 |
Q |
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| T |
31339409 |
tttgtgaaagttagcatggatggagcaccttacctccgtaaagtagacctcaagatgtacaagagttacccagagctctctgatgccttggccaaaatgt |
31339310 |
T |
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| Q |
146 |
tcagctccttcacca |
160 |
Q |
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| | |||||| |||| |
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| T |
31339309 |
ttaactcctttacca |
31339295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 15064116 - 15064165
Alignment:
| Q |
48 |
tgtgaaagttagtatggatggagctccttaccttcgtaaggttgacttga |
97 |
Q |
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|||||||||||| ||||||||||||||||||||| | ||| ||||||||| |
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| T |
15064116 |
tgtgaaagttagcatggatggagctccttaccttagaaagattgacttga |
15064165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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