View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17167_low_1 (Length: 1248)

Name: NF17167_low_1
Description: NF17167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17167_low_1
NF17167_low_1
[»] chr1 (11 HSPs)
chr1 (501-924)||(1479961-1480392)
chr1 (955-1234)||(1479672-1479955)
chr1 (5-249)||(1480568-1480813)
chr1 (1119-1234)||(1471926-1472041)
chr1 (1119-1228)||(1470294-1470402)
chr1 (1119-1234)||(1476949-1477062)
chr1 (1119-1234)||(1474797-1474906)
chr1 (1078-1122)||(1470425-1470469)
chr1 (1078-1122)||(1472064-1472108)
chr1 (1078-1122)||(1477084-1477128)
chr1 (1078-1122)||(1474929-1474973)
[»] scaffold0481 (2 HSPs)
scaffold0481 (1119-1234)||(2576-2691)
scaffold0481 (1078-1122)||(2509-2553)
[»] chr2 (1 HSPs)
chr2 (706-795)||(23233264-23233353)


Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 501 - 924
Target Start/End: Complemental strand, 1480392 - 1479961
Alignment:
Q  501 gttttgaatgtttaacgagaaacctcactacacgttagcattctacggcttatattagacttggttttgtttggtgataaatgaaaatctcctccttaaa 600  Q
    |||||||||||||||| || ||||| ||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  1480392 gttttgaatgtttaactaggaaccttactactcgttagcattctccggcttatattaggcttggttttgtttggtgataaatgaaaatctcctccttaaa 1480293  T
Q  601 tttcttctcactaaaccaccgcttcctcctcctccttgaaccaccgtgagtcatttt-cacactgatccaccgccgcacatcaatgtctattggtcgtga 699  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1480292 tttcttctcacttaaccaccgcttcctcctcctccttgaaccaccgcgagtcatttttcacactgatccaccgccgcacatcaatgtctattggtcgtga 1480193  T
Q  700 aattaacaccattaaatttctctcattttcatcttcaaaagccacctatttcttttccagattcgtgagatttgaaaaaccctaatcagcaccttccctc 799  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  1480192 aattaacaccattaaatttctctcattttcatcttcaaaagccacctatttcttttccagattcgtgagatttgaaaaaccctaatcatcaccttccctc 1480093  T
Q  800 ttaaattcataccactatgaacctcattttgagaaacgaaattgataatcctttttcctcataatgtccgcaacaaaacccctaactat--------att 891  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |        |||    
T  1480092 ttaaattcatgccactatgaacctcattttgagaaacgaaattgataatcc-ttttcctcataatgtccgcaacaaaacccctaactctatttcttgatt 1479994  T
Q  892 tgagcacttccacaaacaaccaccgtgccgaaa 924  Q
    ||||||||| || ||||||||||||||||||||    
T  1479993 tgagcactttcataaacaaccaccgtgccgaaa 1479961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 955 - 1234
Target Start/End: Complemental strand, 1479955 - 1479672
Alignment:
Q  955 aatcccgaagcttatttgagaatccttgcgactcgaatccttcatcgtggctgaacagaaagagatatgcgagcagcttaaataannnnnnnn-gccaaa 1053  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||         ||||||    
T  1479955 aatcccgaagcttatttgagaatccttgcgactcgaatccttcatcgtggctgaacagaaagagatatgtgagtagcttaaataatttttttttgccaaa 1479856  T
Q  1054 tgatgaagtaagnnnnnnnngccttcaaaggtttcatctttgttattattggttagaatatagttatttgaatttgatgtagtatgctagggtttgggtt 1153  Q
    ||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||    
T  1479855 tgatgaagtaagttttttt-gccttcaaaggtttcatctttgttattattggttagaatatagttatttgaatatgatgtattatgcaagggtttgggtt 1479757  T
Q  1154 ctgatatgtaaga----taaagtaaaggatcgagttgttataaaaatgaatgtaggcaccaaatttcttagtctgatgtgcatta 1234  Q
    |||||||||||||    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1479756 ctgatatgtaagataaataaagtaaaggatcgagttgttttaaaaatgaatgtaggcaccaaatttcttagtctgatgtgcatta 1479672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 167; E-Value: 8e-89
Query Start/End: Original strand, 5 - 249
Target Start/End: Complemental strand, 1480813 - 1480568
Alignment:
Q  5 acctactagtgagtataataaacctaccactaatttttgtaactaggtctcatagtaggtcttttttcgaaaaactcggccttctcctactcgaggtttt 104  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||    
T  1480813 acctactattgagtataataaacctagcactaatttttgtaactaggtctcatagtaggtctttttccgaaaaaatcggccttctcctactagaggtttt 1480714  T
Q  105 atagctatcctaannnnnnnnn-gaaagaaatagacgatttaaaaaatattgtaggtattaagaaaagtttagacaaaatccgtacaaaatgtgattttt 203  Q
    |||||||||||||          ||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||    
T  1480713 atagctatcctaattttttttttgaaagaaatagacgatttaaaaaataccgcaggtattaagaaaagtttagacaaaatccgtacaaaatgtgattttt 1480614  T
Q  204 ccttgagtaaaaatttgaaatacatgatttggctgtcaattatgca 249  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||    
T  1480613 ccttaagtaaaaatttggaatacatgatttggccgtcaattatgca 1480568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 5e-44
Query Start/End: Original strand, 1119 - 1234
Target Start/End: Complemental strand, 1472041 - 1471926
Alignment:
Q  1119 atttgaatttgatgtagtatgctagggtttgggttctgatatgtaagataaagtaaaggatcgagttgttataaaaatgaatgtaggcaccaaatttctt 1218  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||||||||||||||    
T  1472041 atttgaatttgatgtattatgcaagggtttgggttctgatatgtaagataaagtaaaagattgagttgttttaaaaatgaatgtaagcaccaaatttctt 1471942  T
Q  1219 agtctgatgtgcatta 1234  Q
    ||||||||||||||||    
T  1471941 agtctgatgtgcatta 1471926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 1119 - 1228
Target Start/End: Complemental strand, 1470402 - 1470294
Alignment:
Q  1119 atttgaatttgatgtagtatgctagggtttgggttctgatatgtaagataaagtaaaggatcgagttgttataaaaatgaatgtaggcaccaaatttctt 1218  Q
    |||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1470402 atttgaatttgatgtattatgcaagg-tttgggttctaatatgtaagataaagtaaaggatcgagttgttttaaaaatgaatgtaggcaccaaatttctt 1470304  T
Q  1219 agtctgatgt 1228  Q
    ||||||||||    
T  1470303 agtctgatgt 1470294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 1119 - 1234
Target Start/End: Complemental strand, 1477062 - 1476949
Alignment:
Q  1119 atttgaatttgatgtagtat---gctagggtttgggttctgatatgtaagataaagtaaaggatcgagttgttataaaaatgaatgtaggcaccaaattt 1215  Q
    |||||||||||||||| |||   || ||||||||||||||||||||| ||||||||     ||||||| |||| |||||||||||| |||||||||||||    
T  1477062 atttgaatttgatgtattattatgcaagggtttgggttctgatatgttagataaag-----gatcgagctgttttaaaaatgaatgcaggcaccaaattt 1476968  T
Q  1216 cttagtctgatgtgcatta 1234  Q
    |||||||||||||||||||    
T  1476967 cttagtctgatgtgcatta 1476949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 1119 - 1234
Target Start/End: Complemental strand, 1474906 - 1474797
Alignment:
Q  1119 atttgaatttgatgtagtatgctagggtttgggttctgatatgtaagataaagtaaaggatcgagttgttataaaaatgaatgtaggcaccaaatttctt 1218  Q
    |||||||| | ||||| ||||| | |||||||||||||||      || ||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  1474906 atttgaatattatgtattatgcaatggtttgggttctgat------gacaaagtaaaggatcaagttgttttaaaaatgaatgtaggcaccaaatttctt 1474813  T
Q  1219 agtctgatgtgcatta 1234  Q
    ||||| |||| |||||    
T  1474812 agtctaatgtacatta 1474797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1078 - 1122
Target Start/End: Complemental strand, 1470469 - 1470425
Alignment:
Q  1078 tcaaaggtttcatctttgttattattggttagaatatagttattt 1122  Q
    |||||||||||||| |||||||||||||||||||| |||||||||    
T  1470469 tcaaaggtttcatccttgttattattggttagaatttagttattt 1470425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1078 - 1122
Target Start/End: Complemental strand, 1472108 - 1472064
Alignment:
Q  1078 tcaaaggtttcatctttgttattattggttagaatatagttattt 1122  Q
    |||||||||||||| |||||||||||||||||||| |||||||||    
T  1472108 tcaaaggtttcatccttgttattattggttagaatttagttattt 1472064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1078 - 1122
Target Start/End: Complemental strand, 1477128 - 1477084
Alignment:
Q  1078 tcaaaggtttcatctttgttattattggttagaatatagttattt 1122  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||    
T  1477128 tcaaaggttccatccttgttattattggttagaatatagttattt 1477084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1078 - 1122
Target Start/End: Complemental strand, 1474973 - 1474929
Alignment:
Q  1078 tcaaaggtttcatctttgttattattggttagaatatagttattt 1122  Q
    |||||||||||||| ||||||||||||||| ||||| ||||||||    
T  1474973 tcaaaggtttcatccttgttattattggtttgaataaagttattt 1474929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 72; Significance: 4e-32; HSPs: 2)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 1119 - 1234
Target Start/End: Original strand, 2576 - 2691
Alignment:
Q  1119 atttgaatttgatgtagtatgctagggtttgggttctgatatgtaagataaagtaaaggatcgagttgttataaaaatgaatgtaggcaccaaatttctt 1218  Q
    |||||||||||||||| ||||| |||||||||||||| ||| || ||||||||||||||||||| ||||| ||||||| |||||| |||||||| |||||    
T  2576 atttgaatttgatgtattatgcaagggtttgggttcttatacgttagataaagtaaaggatcgaattgttttaaaaataaatgtaagcaccaaaattctt 2675  T
Q  1219 agtctgatgtgcatta 1234  Q
    | ||||||||||||||    
T  2676 aatctgatgtgcatta 2691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 1078 - 1122
Target Start/End: Original strand, 2509 - 2553
Alignment:
Q  1078 tcaaaggtttcatctttgttattattggttagaatatagttattt 1122  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||    
T  2509 tcaaaggtttcatctttgttattattggttacaatagcgttattt 2553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 706 - 795
Target Start/End: Complemental strand, 23233353 - 23233264
Alignment:
Q  706 caccattaaatttctctcattttcatcttcaaaagccacctatttcttttccagattcgtgagatttgaaaaaccctaatcagcaccttc 795  Q
    |||||||||||| ||||| | ||| |||||||||  |||| |||| ||||| ||||  |||| |||| |||||||| ||||| |||||||    
T  23233353 caccattaaattcctctcttcttcctcttcaaaaatcacccatttattttctagatctgtgaaatttcaaaaaccccaatcatcaccttc 23233264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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