View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17167_low_3 (Length: 390)
Name: NF17167_low_3
Description: NF17167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17167_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 13141353 - 13140967
Alignment:
| Q |
1 |
aactgaagtactcaaacgaaccaccaccatgacacaagtttgacattcttacctaatcaactcaaccaagcaaatgaaaatgagaatcactaattttgtc |
100 |
Q |
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| T |
13141353 |
aactgaagtactcaaacgaaccaccaccatgacacaagtttgacattcttacctaatcaactcaaccaagcaaatgaaaatgagaatcactaattttgtc |
13141254 |
T |
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| Q |
101 |
cttgaaattatacaggttggtcaatttgatctaaaaattaacgaaatttcaaatgatcacgcaagttgataacttgaaattctcccaaccaaaaagatta |
200 |
Q |
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| T |
13141253 |
cttgaaattatacaggttggtcaatttgatctaaaaattaacgaaatttcaaatgatcacgcaagttgataacttgaaattctcccaaccaaaaagatta |
13141154 |
T |
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| Q |
201 |
atttgattgaagattttttatttaacgaatacagtttggagttttattaattttaacgatcaaatagaccaaatcctacaatttcagatactaaattggt |
300 |
Q |
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| T |
13141153 |
atttgattgaaga--ttttatttaacgaat-tagtttggagtttcattaattttaacaatcaaatagaccaaatcctacaatttcagatactaaattggt |
13141057 |
T |
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| Q |
301 |
ggttcactccaataaaaatgttagaattagcaaacacaatcaattaccaacgagctacctacattttcatcataaaagggagtcttccac |
390 |
Q |
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| T |
13141056 |
ggttcactccaataaaaatgttagaattagcaaacacaatcaattaccaacgagctacctacattttcatcataaaagggagtcttccac |
13140967 |
T |
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