View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_high_14 (Length: 515)
Name: NF17168_high_14
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Complemental strand, 3817364 - 3816884
Alignment:
| Q |
19 |
tctttattacatttgagggaggtcaaagaacactcaatgaaaagaatcaccactacaaagagaggatatcaaaattgtcaacaaatgaattcctttggta |
118 |
Q |
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| T |
3817364 |
tctttattacatttgagggaggtcaaagaacactcaatgaaaagaatcacctctacaaagagaggatatcaaaattgtcaacaaatgaattcctttggta |
3817265 |
T |
|
| Q |
119 |
tgagctgcatcttataattctttttgtttttccttctatattacatttttaaaaggtaattggggaagtcaataataatgctataaatggctaagcatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3817264 |
tgagctgcatcttataattctttttgtttttccttctatattacatttttaaaaggtaattggggaagtcaataataatgctataaatggctaagcatca |
3817165 |
T |
|
| Q |
219 |
gtaggtgcgatccaatgtctcccattgacgaagctcttcctaataaatggatgtgctgtttcgaaatccaactctcgtgcccatgacaccccacgtactg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3817164 |
gtaggtgcgatccaatgtctcccattgacgaagctcttcctgataaatggatgtgctgtttcgaaatccaactctcgtgcccatgacaccccacgtactg |
3817065 |
T |
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| Q |
319 |
cctctgctcccggtccccaacatttgtacactccaaagaacacagtcctaattaagtgtcaccacaaatcaacaagaaagttaaaattcagaaaatcagt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3817064 |
cctctgctcccggtccccaacatttgtacactccaaagaacacagtcctaattaagtgtcaccacaaatcaacaagaaagttaaaattcagaaaatcagt |
3816965 |
T |
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| Q |
419 |
gtggtaataatgtcataaccaaaacaaaaagaaggataaaaagtttacttgtttttgttgttggcgtggtcccaatcatcc |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
3816964 |
gtggtaataatgtcataaccaaaacaaaaagaaggataaaatgtttacttgtttttgttgttggtgtggtcccaatcatcc |
3816884 |
T |
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