View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17168_high_16 (Length: 507)
Name: NF17168_high_16
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_16 |
 | |
|
| [»] scaffold0244 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 271 - 491
Target Start/End: Complemental strand, 22076811 - 22076591
Alignment:
| Q |
271 |
atagagaaactattgctaacatagtccatatgctatcaataaactaaaagttcacatgttgtagaagcctttgggcacagagacaattttctttctattt |
370 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| |||| |||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
22076811 |
atagagaaactattgctaacattgtctatatgctatctataaactaaaagttcacacgttgcagaagcctttaggcacagaaacaattttctttctattt |
22076712 |
T |
|
| Q |
371 |
caggttgttcccttttgctccaaatgaccatgatttccaaagttcttgaattcttcaaaatatattttgcaaacccaagctcaattggtaagcctgagaa |
470 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22076711 |
cagctcgttcccttttgctccaaatgaccatgatttccaaagttcttgaattcttcaaaatatattttgctaacccaagctcaattggtaagcctgagaa |
22076612 |
T |
|
| Q |
471 |
gtctccaatagtgcaagttct |
491 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
22076611 |
gtctccaatagtgcaagttct |
22076591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 4 - 434
Target Start/End: Complemental strand, 22068908 - 22068489
Alignment:
| Q |
4 |
atatgtacaagaatctgtaaaacacaagtggacaaaattaaagcataaaaaataatggctctttaaaaatagaagcaaacagaaatcaattacataatta |
103 |
Q |
| |
|
||||||||||||||||||| ||| || |||||||||||||||||||||| | || ||||||| ||||||| ||||||||||||||||||||| ||| |
|
|
| T |
22068908 |
atatgtacaagaatctgtattacataaa--gacaaaattaaagcataaaaaaaa--ggttctttaataatagaaacaaacagaaatcaattacatagtta |
22068813 |
T |
|
| Q |
104 |
gggttgataagtagtaactagatcatttaaagatcattttccatttatttgtgccacaaacagaaatcaatgagacaaagtcaagaacttaatcata--- |
200 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||||||||||||| || |||||||| |||||||||||||||| | ||||| | || |
|
|
| T |
22068812 |
gggtagataagtactaactaaatcatttaaagatcattttcccttcatttgtgc--------------aatgagacaaagtcaaaaccttaaccttaata |
22068727 |
T |
|
| Q |
201 |
----ggtcatagcttcacaccaccaaaaccagcagttgagttgaatggtagaagcttataaagccataagcatgatagagaaactattgctaacatagtc |
296 |
Q |
| |
|
| |||||| | | ||||||||| ||||||||||| ||||||||||| | || |||| ||| ||||||||||||||||||||| || |||||||| |
|
|
| T |
22068726 |
ataagctcatagttcaaaaccaccaaatccagcagttgaattgaatggtaggatctaataataccacaagcatgatagagaaactattacttacatagtc |
22068627 |
T |
|
| Q |
297 |
catatgctatcaataaactaaaagttcacatgttgtagaagcctttgggcacagagacaattttctttctatttcaggttgttcccttttgctccaaatg |
396 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
22068626 |
taaatgctatcactaaactaaaagttcacatgttgtagaagcctttgggcatgcagacaattttctttctatttcaggttgttcacttctgctccaaatt |
22068527 |
T |
|
| Q |
397 |
accatgatttccaaagttcttgaattcttcaaaatata |
434 |
Q |
| |
|
| ||||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
22068526 |
atcatgatttctaaatttctcgaattcttcaaaatata |
22068489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 22077017 - 22076824
Alignment:
| Q |
1 |
caaatatgtacaagaatctgtaaaacacaagtggacaaaattaaagcataaaaaataatggctctttaaaaatagaagcaaacagaaatcaattacataa |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
22077017 |
caaatatgtaccagaatctgtaaaacacaaaggg-caaaattaaagcataaaaaataatggctctttaaaaatagaaacaaacagaaatcaattacatag |
22076919 |
T |
|
| Q |
101 |
ttagggttgataagtagtaactagatcatttaaagatcattttccatttatttgtgccacaaacagaaatcaatgagacaaagtcaagaacttaa |
195 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22076918 |
ttagggtagataagtagtaactagatcttttaaagatcattttccctttatttgtgccacaaacagaaatcaatgagacaaagtcaagaacttaa |
22076824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 298 - 486
Target Start/End: Complemental strand, 22057511 - 22057323
Alignment:
| Q |
298 |
atatgctatcaataaactaaaagttcacatgttgtagaagcctttgggcacagagacaattttctttctatttcaggttgttcccttttgctccaaatga |
397 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
22057511 |
atatgctatcaataaactataagttcacatgctgcagaagccttagggcatgcagacaattttctttctatttcagcttgctcccttttgctccaaatga |
22057412 |
T |
|
| Q |
398 |
ccatgatttccaaagttcttgaattcttcaaaatatattttgcaaacccaagctcaattggtaagcctgagaagtctccaatagtgcaa |
486 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| |||||||| | || ||||||||| |||||||| |||||||||||| |
|
|
| T |
22057411 |
tcatgatttccaaaattcttgaattcttcaaaataaattttgctaacccaagatgaactggtaagccagagaagtccccaatagtgcaa |
22057323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 22057715 - 22057642
Alignment:
| Q |
33 |
ggacaaaattaaagcataaaaaataatggctctttaaaaatagaagcaaacagaaatcaattacataattaggg |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||||| |||||| |
|
|
| T |
22057715 |
ggacaaaattaaagcataaaaaataatggctctttaaaaatcgaaataaacagatatcagttacatagttaggg |
22057642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 22057579 - 22057511
Alignment:
| Q |
178 |
acaaagtcaagaacttaatcataggtcatagcttcacaccaccaaaaccagcagttgagttgaatggta |
246 |
Q |
| |
|
|||||||||| | |||| | |||| |||||| |||| |||| |||| |||||||||||||||||||||| |
|
|
| T |
22057579 |
acaaagtcaaaaccttattaatagctcatagtttcaaaccaacaaatccagcagttgagttgaatggta |
22057511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0244 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 264 - 491
Target Start/End: Original strand, 5586 - 5813
Alignment:
| Q |
264 |
aagcatgatagagaaactattgctaacatagtccatatgctatcaataaactaaaagttcacatgttgtagaagcctttgggcacagagacaattttctt |
363 |
Q |
| |
|
||||| |||||||||||||| || |||||| ||||||||| ||| |||||||| || ||||||| |||||||||||||| | | ||||||||||| |
|
|
| T |
5586 |
aagcaggatagagaaactataactttcatagtttatatgctattaatgaactaaaactttacatgttatagaagcctttggggatgaatacaattttctt |
5685 |
T |
|
| Q |
364 |
tctatttcaggttgttcccttttgctccaaatgaccatgatttccaaagttcttgaattcttcaaaatatattttgcaaacccaagctcaattggtaagc |
463 |
Q |
| |
|
|||||||||| |||| ||| |||||| |||||| |||| |||| ||| |||||||||||||||||||||||||||| ||| ||||||| | ||| || |
|
|
| T |
5686 |
tctatttcagattgtccccctttgcttcaaatgttcatggtttctaaaattcttgaattcttcaaaatatattttgctaactgaagctcacattgtaggc |
5785 |
T |
|
| Q |
464 |
ctgagaagtctccaatagtgcaagttct |
491 |
Q |
| |
|
|||||||||| |||| |||||||||||| |
|
|
| T |
5786 |
ctgagaagtccccaaaagtgcaagttct |
5813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 392
Target Start/End: Complemental strand, 825291 - 825197
Alignment:
| Q |
298 |
atatgctatcaataaactaaaagttcacatgttgtagaagcctttgggcacagagacaattttctttctatttcaggttgttcccttttgctcca |
392 |
Q |
| |
|
||||| |||| || |||| |||||| |||||||| ||| ||||||| |||| | ||||| ||||||||||||||| | |||||| ||||||||| |
|
|
| T |
825291 |
atatgttatctatgaactgaaagtttacatgttgcagatgcctttgtgcacggggacaactttctttctatttcaaggggttcccctttgctcca |
825197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 395
Target Start/End: Original strand, 989384 - 989506
Alignment:
| Q |
272 |
tagagaaactattgctaacatagtccatatgctatcaataaactaaaagttcacatgttgtagaagcctttgggcacagagacaattttctttctatttc |
371 |
Q |
| |
|
||||||||||| | || |||||||| ||||| ||||| |||| |||||| ||||| || ||| ||||| ||||| | ||||| || |||||||||| |
|
|
| T |
989384 |
tagagaaactactacttacatagtctatatgtaatcaa-aaacagaaagttgacatgatgcagaggccttcgggcatggggacaacttcgtttctatttc |
989482 |
T |
|
| Q |
372 |
aggttgttcccttttgctccaaat |
395 |
Q |
| |
|
|||| |||| |||||||||||||| |
|
|
| T |
989483 |
aggtggttctcttttgctccaaat |
989506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 438
Target Start/End: Complemental strand, 1006357 - 1006271
Alignment:
| Q |
352 |
gacaattttctttctatttcaggttgttcccttttgctccaaatgaccatgatttccaaagttcttgaattcttcaaaatatatttt |
438 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||| |||||||| ||||||||| ||| || | ||||||||||||||||||| |
|
|
| T |
1006357 |
gacagttttctctctatttcagattgttccctttcactccaaattgtcatgatttctaaatttttaccattcttcaaaatatatttt |
1006271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 379
Target Start/End: Complemental strand, 821555 - 821474
Alignment:
| Q |
298 |
atatgctatcaataaactaaaagttcacatgttgtagaagcctttgggcacagagacaattttctttctatttcaggttgtt |
379 |
Q |
| |
|
||||| |||||||||| | |||||| |||||||| ||||||| ||||||| |||| ||| ||||||||||||| ||||| |
|
|
| T |
821555 |
atatgttatcaataaaatgaaagttgacatgttgcagaagcccttgggcatggagataatcgactttctatttcagattgtt |
821474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 341
Target Start/End: Complemental strand, 40638433 - 40638363
Alignment:
| Q |
271 |
atagagaaactattgctaacatagtccatatgctatcaataaactaaaagttcacatgttgtagaagcctt |
341 |
Q |
| |
|
|||||||||||| | || |||| ||| |||||||||||||| |||||| ||| |||||||| ||| ||||| |
|
|
| T |
40638433 |
atagagaaactagtacttacatggtctatatgctatcaatacactaaaggttgacatgttgcagaggcctt |
40638363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University