View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17168_high_26 (Length: 429)
Name: NF17168_high_26
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 25537944 - 25538135
Alignment:
| Q |
17 |
aaatgtgtgcacaattcatagctttaccattcttaatcaattcattaaacactctgttggccaaggttgcaaccaccttgaaacaacgatcaaccatttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25537944 |
aaatgtgtgcacaattcatagctttaccattcttaatcaattcattaaacactctgttggccaaggttgcaaccaccttgaaacaacgatcaaccatttt |
25538043 |
T |
|
| Q |
117 |
gtttaaaatctttaaagcatcgtcaatcttatcgactttcaaatacgcatcaatcaaagtcataagactcataagactctatagcttcctta |
208 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
25538044 |
gtttaaaatcttcaaagcatcgtcaatcttatcgactttcaaatacgcatcaatcaaagtcaaaagactcataagactctatagcttcctta |
25538135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 180
Target Start/End: Original strand, 25544228 - 25544391
Alignment:
| Q |
17 |
aaatgtgtgcacaattcatagctttaccattcttaatcaattcattaaacactctgttggccaaggttgcaaccaccttgaaacaacgatcaaccatttt |
116 |
Q |
| |
|
||||||||||||| | |||| ||||||||||||||||||||| |||||| |||||| ||| | ||||||||| || | ||| ||||| || |
|
|
| T |
25544228 |
aaatgtgtgcacagtccataactttaccattcttaatcaatttgccaaacaccctgttgctagagggcgtgtccaccttgataccaacatccaccatctt |
25544327 |
T |
|
| Q |
117 |
gtttaaaatctttaaagcatcgtcaatcttatcgactttcaaatacgcatcaatcaaagtcata |
180 |
Q |
| |
|
|||||||||| | |||||||| ||||| ||| |||||||||| | || |||||||||| |||| |
|
|
| T |
25544328 |
gtttaaaatcctcaaagcatcatcaatgctattgactttcaaacatgcgtcaatcaaagacata |
25544391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 161
Target Start/End: Complemental strand, 43224360 - 43224237
Alignment:
| Q |
38 |
ctttaccattcttaatcaattcattaaacactctgttggccaaggttgcaaccaccttgaaacaacgatcaaccattttgtttaaaatctttaaagcatc |
137 |
Q |
| |
|
|||||||||||||||||||||||| ||| || || ||| | ||||| ||| |||| | |||| |||||| ||||| ||||| || | | | |||||||| |
|
|
| T |
43224360 |
ctttaccattcttaatcaattcatcaaaaaccctattgccgaaggtagcagtcaccctcaaaccacgatccaccatcttgttaaataccctcaaagcatc |
43224261 |
T |
|
| Q |
138 |
gtcaatcttatcgactttcaaata |
161 |
Q |
| |
|
||||| ||| | ||||||||||| |
|
|
| T |
43224260 |
atcaatgttacccactttcaaata |
43224237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University