View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_high_37 (Length: 394)
Name: NF17168_high_37
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 46332951 - 46333326
Alignment:
| Q |
1 |
tcatcatatatactaacaaaacaataagataaattcacaagaatgctacaagttatgaaattaacatactaataagagaaaatcacaaaaacattatagg |
100 |
Q |
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| T |
46332951 |
tcatcatatatactaacaaaacaataagataaattcacaagaatgctacaagttatgaaattaacatactaataagagaaaatcacaaaaacattatagg |
46333050 |
T |
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| Q |
101 |
tatactatacatgaacaagagaagaaaaggggtatcttactctttcagaatagcaacagggttaccctttgaatcaaaaagagcaacttttgtagattca |
200 |
Q |
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| T |
46333051 |
tatactatacatgaacaagagaagaaaaggggtatcttactctttcagaatagcaacagggttaccctttgaatcaaaaagagcaacttttgtagattca |
46333150 |
T |
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| Q |
201 |
ccgatccgatgtttctgatcatcatcaatagccaaaacaataggaacagacatattcacaaaagacccatcattgagtctaagtgaattgaaatgaagcg |
300 |
Q |
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| T |
46333151 |
ccgatccgatgtttctgatcatcatcaatagccaaaacaataggaacagacatattcacaaaagacccatcattgagtctaagtgaattgaaatgaagcg |
46333250 |
T |
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| Q |
301 |
tttggaggaactctctttctctcatgaaaccaccaagtggggtagcccacccttcactcagcacatgaacccattc |
376 |
Q |
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| T |
46333251 |
tttggaggaactctctttctctcatgaaaccaccaagtggggtagcccacccttcactcagcacatgaacccattc |
46333326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 6010910 - 6010834
Alignment:
| Q |
219 |
tcatcatcaatagccaaaacaataggaacagacatattcacaaaagacccatcattgagtctaagtgaattgaaatg |
295 |
Q |
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||||||||||||| |||||||||||||| |||||||| |||||||| |||||||| | ||||||||||| ||||| |
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| T |
6010910 |
tcatcatcaatagacaaaacaataggaagtgacatattaacaaaagaaccatcattcaacctaagtgaattaaaatg |
6010834 |
T |
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