View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_high_44 (Length: 349)
Name: NF17168_high_44
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 24595792 - 24595474
Alignment:
| Q |
18 |
gaaagctgtagattagtaaagcaaatgaaacactacttttatgtttgaagaggaagagcatacatggtttgttattgcaattgcatttcatgtacatagc |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24595792 |
gaaagctatagattagtaaagcaaatgaaacactacttttatgtttgaagaggaagagcatacatggtttgttattgcaattgcatttcatgtacatagc |
24595693 |
T |
|
| Q |
118 |
aaggtcttaatataactatattcannnnnnnattacgtttaagtaagaagtatacaccgactttgttgaatactaattttcgttgtataaatttagtaac |
217 |
Q |
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||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||| |
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| T |
24595692 |
aaggtcttaatataactatgttcatttttttatcacgtttaagtaagaagtatacaccgactttgttgaatactaatcttcgttgtataacttgagtaac |
24595593 |
T |
|
| Q |
218 |
tatcttgagatgggtctctcctaccattgttccatctgaaagactcgaacttatgtgatccgagtctagttccactcagatcaatgtaatgttggtttat |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24595592 |
tatcttgagatgggtctctcttaccattgttccatctgaaagactcgaacttatgtgatccgagtctagttccactcagatcaatgtaatgttggtttat |
24595493 |
T |
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| Q |
318 |
tataaatatattatgtata |
336 |
Q |
| |
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| ||||||||||||||||| |
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| T |
24595492 |
tgtaaatatattatgtata |
24595474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 24618322 - 24618640
Alignment:
| Q |
18 |
gaaagctgtagattagtaaagcaaatgaaacactacttttatgtttgaagaggaagagcatacatggtttgttattgcaattgcatttcatgtacatagc |
117 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24618322 |
gaaagctatagattagtaaagcaaatgaaacactacttttatgtttgaagaggaagagcatacatggtttgttattgcaattgcatttcatgtacatagc |
24618421 |
T |
|
| Q |
118 |
aaggtcttaatataactatattcannnnnnnattacgtttaagtaagaagtatacaccgactttgttgaatactaattttcgttgtataaatttagtaac |
217 |
Q |
| |
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||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||||| |
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| T |
24618422 |
aaggtcttaatataactatgttcatttttttatcacgtttaagtaagaagtatacaccgactttgttgaatactaatcttcgttgtataacttgagtaac |
24618521 |
T |
|
| Q |
218 |
tatcttgagatgggtctctcctaccattgttccatctgaaagactcgaacttatgtgatccgagtctagttccactcagatcaatgtaatgttggtttat |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24618522 |
tatcttgagatgggtctctcttaccattgttccatctgaaagactcgaacttatgtgatccgagtctagttccactcagatcaatgtaatgttggtttat |
24618621 |
T |
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| Q |
318 |
tataaatatattatgtata |
336 |
Q |
| |
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| ||||||||||||||||| |
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| T |
24618622 |
tgtaaatatattatgtata |
24618640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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