View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_high_47 (Length: 345)
Name: NF17168_high_47
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_47 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 46011711 - 46011387
Alignment:
| Q |
1 |
tcccattcttgtgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgtaatcttccggtc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46011711 |
tcccattcttgtgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgtaatcttctggtc |
46011612 |
T |
|
| Q |
101 |
ctgaaagaaccaaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacaccataaaaattacc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46011611 |
ctgaaagaaccaaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacaccataaaaattacc |
46011512 |
T |
|
| Q |
201 |
ttcttccaaatctacaaatgttaactttgctccataaacaataaaatcatcttttccttcaccttcctccatcattttttccaatacatgattctcattc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
46011511 |
ttcttccaaatctacaaatgttaactttgctccataaacaataaaatcatcttttccttcaccttcctccatcattttttccaatccatgattctcgttc |
46011412 |
T |
|
| Q |
301 |
annnnnnnctcagcaattagcttca |
325 |
Q |
| |
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| ||||||||||||||||| |
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| T |
46011411 |
atttttttctcagcaattagcttca |
46011387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 12 - 301
Target Start/End: Complemental strand, 13116568 - 13116279
Alignment:
| Q |
12 |
tgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgtaatcttccggtcctgaaagaacc |
111 |
Q |
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||||||||||||||||| |||||||||||||| || || || |||| ||||| |||||||||||||||||||| |||||| ||||||| ||||||| |
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| T |
13116568 |
tgctagtttacatttcagctggtcaagttcttttcctggcaatgaaactgttatcatccttccattattaccatcagtatcttctggtcctggaagaacc |
13116469 |
T |
|
| Q |
112 |
aaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacaccataaaaattaccttcttccaaat |
211 |
Q |
| |
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||||||||||||| |||| ||||| || |||||||||||| ||| ||| |||||||| ||||||||||||| | ||||||| | | |||||||| | |
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| T |
13116468 |
aaaacaactccttcatcatgaacaccgcggaaatcacaatttaccataatgggtttctgtccattaatctttatctcgtaaaaatcagcctcttccaagt |
13116369 |
T |
|
| Q |
212 |
ctacaaatgttaactttgctccataaacaataaaatcatcttttccttcaccttcctccatcattttttccaatacatgattctcattca |
301 |
Q |
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|||||||||||||||| ||||||||||| ||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||| |
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| T |
13116368 |
ctacaaatgttaacttagctccataaactataaaatgctctttgccttcaccgtcctccacaattttttccaatacatgattctcattca |
13116279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 23 - 299
Target Start/End: Complemental strand, 15924739 - 15924463
Alignment:
| Q |
23 |
atttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgtaatcttccggtcctgaaagaaccaaaacaactcc |
122 |
Q |
| |
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||||||| ||||||||||||||||| || || |||| | ||| ||| |||||||| ||||||| | |||||| || |||| || ||||||||||||||| |
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| T |
15924739 |
atttcaactggtcaagttctttccctggcaatgaaacttttatcattcttccattgttaccatcatcatcttctggacctggaaaaaccaaaacaactcc |
15924640 |
T |
|
| Q |
123 |
ttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacaccataaaaattaccttcttccaaatctacaaatgtt |
222 |
Q |
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||||||||| |||||||| ||||||||||| ||| ||| ||||||| ||||||| |||||||||||| |||| | |||||||||| |||||||||||| |
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| T |
15924639 |
ttgatcaccgacaccacgtaaatcacaattcgccctaataggtttctttccattaagctttacaccatataaatcagcttcttccaagtctacaaatgtt |
15924540 |
T |
|
| Q |
223 |
aactttgctccataaacaataaaatcatcttttccttcaccttcctccatcattttttccaatacatgattctcatt |
299 |
Q |
| |
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|||||||||||||| |||| ||||||||||||||| ||||||| ||||| || |||||||||| ||| ||||||||| |
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| T |
15924539 |
aactttgctccatatacaaaaaaatcatcttttccatcacctttctccaccaatttttccaatgcataattctcatt |
15924463 |
T |
|
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