View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_high_52 (Length: 323)
Name: NF17168_high_52
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_52 |
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| [»] scaffold0419 (2 HSPs) |
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| [»] scaffold0277 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 2285630 - 2285928
Alignment:
| Q |
13 |
gctatcattgacaaaacaatagttaacatcgcattaaactttgaaaaagacagataaatcgaaataaactttttctaccnnnnnnnnnnnncatgtagaa |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2285630 |
gctatcattgacaaaacaatagttaacatcgcattaaactttgaaaaagacagataaatcgaaataaactttttctaccaaaaaaaaaa--catgtagaa |
2285727 |
T |
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| Q |
113 |
aggaaaagagggattacataccttgaaggaaaggaaagaggaggttgctgaggaaggtttaagtccagtaaatccaatatcatatgcaatacttccatca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2285728 |
aggaaaagagggattacataccttgaaggaaaggaaagaggaggttgctgaggaaggtttaagtccagtaaatccaatatcatatgcaatacttccatca |
2285827 |
T |
|
| Q |
213 |
tgattaaataatccaaaatgtctttctgatcctggtccaggcttcaaattctcattgaacaaagcaaatatataaaccctaaccaacattttaggcctat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2285828 |
tgattaaataatccaaaatgtctttctgatcctggtccaggcttcaaattctcattgaacaaagcaaatatataaaccctaaccaacattttaggcctat |
2285927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 9840410 - 9840462
Alignment:
| Q |
19 |
attgacaaaacaatagttaacatcgcattaaactttgaaaaagacagataaat |
71 |
Q |
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| T |
9840410 |
attgacaaaacaatagttaatgttgcattgagctttgaaaaagacaaataaat |
9840462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 28778190 - 28778236
Alignment:
| Q |
24 |
caaaacaatagttaacatcgcattaaactttgaaaaagacagataaa |
70 |
Q |
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||||||||||||||| |||| ||||||||||||||| |||| ||||| |
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| T |
28778190 |
caaaacaatagttaatatcgtattaaactttgaaaatgacaaataaa |
28778236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 28784205 - 28784251
Alignment:
| Q |
24 |
caaaacaatagttaacatcgcattaaactttgaaaaagacagataaa |
70 |
Q |
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||||||||||||||| |||| ||||||||||||||| |||| ||||| |
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| T |
28784205 |
caaaacaatagttaatatcgtattaaactttgaaaatgacaaataaa |
28784251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0419
Description:
Target: scaffold0419; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 13275 - 13324
Alignment:
| Q |
22 |
gacaaaacaatagttaacatcgcattaaactttgaaaaagacagataaat |
71 |
Q |
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|||||||||||||| || |||| ||||||||||||||| |||| |||||| |
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| T |
13275 |
gacaaaacaatagtaaatatcgtattaaactttgaaaatgacaaataaat |
13324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0419; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 2502 - 2550
Alignment:
| Q |
22 |
gacaaaacaatagttaacatcgcattaaactttgaaaaagacagataaa |
70 |
Q |
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|||||||||||||| || |||| ||||||||||||||| |||| ||||| |
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| T |
2502 |
gacaaaacaatagtaaatatcgtattaaactttgaaaatgacaaataaa |
2550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0277 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0277
Description:
Target: scaffold0277; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 8067 - 8018
Alignment:
| Q |
22 |
gacaaaacaatagttaacatcgcattaaactttgaaaaagacagataaat |
71 |
Q |
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|||||||||||||| || |||| ||||||||||||||| |||| |||||| |
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| T |
8067 |
gacaaaacaatagtaaatatcgtattaaactttgaaaatgacaaataaat |
8018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 1392023 - 1391967
Alignment:
| Q |
24 |
caaaacaatagttaacatcgcattaaactttgaaaaagacagataaatcgaaataaa |
80 |
Q |
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||||||||||||||| || | ||||||||||||||| |||| |||||| | |||||| |
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| T |
1392023 |
caaaacaatagttaatattgtattaaactttgaaaatgacatataaataggaataaa |
1391967 |
T |
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