View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_high_53 (Length: 319)
Name: NF17168_high_53
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_53 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 41 - 301
Target Start/End: Original strand, 31078366 - 31078626
Alignment:
| Q |
41 |
actaacataatgtaaagcaacaaccatttgctccttaactgagatatctcaagattcatcaatcgtaatagcaaagaaatcatctcctacatcatgaagt |
140 |
Q |
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| T |
31078366 |
actaacataacgtaaagcaacaaccatttactccttaactgagatatctcaagattcatcaatcgtaataacaaagaaatcatctcctacatcatgaagt |
31078465 |
T |
|
| Q |
141 |
attgctttagtaattttatgggcatcaactctaaccatttccttttgaatttgaggagatgttagctcaagattttcacgtgtattcttccaaacttcac |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31078466 |
attgctttagtaattttatgggcatcaactctaaccatttccttttgaatttgaggagatgttagctcaagattttcacgagtattcttccaaacttcac |
31078565 |
T |
|
| Q |
241 |
gagtagtttcattatggttaacaagaaaattagcattattacttgatgatggagtctcatc |
301 |
Q |
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| T |
31078566 |
gagtagtttcattatggttaacaagaaaattaccattattacttgataatggagtctcatc |
31078626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 44 - 270
Target Start/End: Original strand, 22328154 - 22328380
Alignment:
| Q |
44 |
aacataatgtaaagcaacaaccatttgctccttaactgagatatctcaagattcatcaatcgtaatagcaaagaaatcatctcctacatcatgaagtatt |
143 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||| | ||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
22328154 |
aacataatgtaaagcaacaaccattttctccttaattgagatatcccgagattcatcaatcataatagcaaagaaatcatctcctagatcatgaagtatt |
22328253 |
T |
|
| Q |
144 |
gctttagtaattttatgggcatcaactctaaccatttccttttgaatttgaggagatgttagctcaagattttcacgtgtattcttccaaacttcacgag |
243 |
Q |
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| T |
22328254 |
gctttagtagtttcatgggcagcaactttaacaatatccttttgaatttgaggagatgttagcttaagatttccactagtattcttccaaacctcaggaa |
22328353 |
T |
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| Q |
244 |
tagtttcattatggttaacaagaaaat |
270 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
22328354 |
tagtttcattatggttaacaagaaaat |
22328380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 43 - 270
Target Start/End: Complemental strand, 22971555 - 22971329
Alignment:
| Q |
43 |
taacataatgtaaagcaacaaccatttgctccttaactgagatatctcaagattcatcaatcgtaatagcaaagaaatcatctcctacatcatgaagtat |
142 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
22971555 |
taacataacgtaaagcaacaaccatttgctctttaactgagatatctcgagattcatcaatcataatagcaaagaaatcatctcctagatcatgaagtat |
22971456 |
T |
|
| Q |
143 |
tgctttagtaattttatgggcatcaactctaaccatttccttttgaatttgaggagatgttagctcaagattttcacgtgtattcttccaaacttcacga |
242 |
Q |
| |
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| || ||||| ||| || |||| |||||||||| || |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||| |
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| T |
22971455 |
tactatagtagtttcataggcagcaactctaacaatatccttttgaatttgaggagatgttagcttaagatttccactagtattcttccaaacatcacga |
22971356 |
T |
|
| Q |
243 |
gtagtttcattatggttaacaagaaaat |
270 |
Q |
| |
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||| ||||||||| ||||||||||||| |
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| T |
22971355 |
atag-ttcattatgattaacaagaaaat |
22971329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 43 - 270
Target Start/End: Complemental strand, 22963311 - 22963085
Alignment:
| Q |
43 |
taacataatgtaaagcaacaaccatttgctccttaactgagatatctcaagattcatcaatcgtaatagcaaagaaatcatctcctacatcatgaagtat |
142 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| ||| |
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| T |
22963311 |
taacataacgtaaagcaacaaccatttgctctttaactgagatatctcgagattcatcaatcataatagcaaagaaatcatctcctagatcatgaa-tat |
22963213 |
T |
|
| Q |
143 |
tgctttagtaattttatgggcatcaactctaaccatttccttttgaatttgaggagatgttagctcaagattttcacgtgtattcttccaaacttcacga |
242 |
Q |
| |
|
|||| ||||| ||| || |||| || ||||||| || |||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||| |||| | |
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| T |
22963212 |
tgctatagtagtttcataggcagcagctctaacaatatccttttgaatttgagtagatgttagcttaagatttccactagtattcttccaaacatcacaa |
22963113 |
T |
|
| Q |
243 |
gtagtttcattatggttaacaagaaaat |
270 |
Q |
| |
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||||||||||||| ||||||||||||| |
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| T |
22963112 |
atagtttcattatgattaacaagaaaat |
22963085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 43 - 270
Target Start/End: Original strand, 21879070 - 21879296
Alignment:
| Q |
43 |
taacataatgtaaagcaacaaccatttgctccttaactgagatatctcaagattcatcaatcgtaatagcaaagaaatcatctcctacatcatgaagtat |
142 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
21879070 |
taacataacgtaaagcaacaaccatttgctctttaactgagatatctcgagattcatcaatcataatagcaaagaaatcatctcctagatcatgaagtat |
21879169 |
T |
|
| Q |
143 |
tgctttagtaattttatgggcatcaactctaaccatttccttttgaatttgaggagatgttagctcaagattttcacgtgtattcttccaaacttcacga |
242 |
Q |
| |
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| || ||||| ||| || |||| |||||||||| || |||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||| |
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| T |
21879170 |
tactatagtagtttcataggcagcaactctaacaatatccttttgaatttgaggagatgttagcttaagatttccactagtattcttccaaacatcacga |
21879269 |
T |
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| Q |
243 |
gtagtttcattatggttaacaagaaaat |
270 |
Q |
| |
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||| ||||||||| ||||||||||||| |
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|
| T |
21879270 |
atag-ttcattatgattaacaagaaaat |
21879296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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