View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17168_high_54 (Length: 319)

Name: NF17168_high_54
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17168_high_54
NF17168_high_54
[»] chr3 (12 HSPs)
chr3 (1-311)||(23235427-23235737)
chr3 (1-303)||(23231543-23231845)
chr3 (3-142)||(23196200-23196339)
chr3 (64-173)||(23240162-23240271)
chr3 (1-115)||(23226400-23226514)
chr3 (10-88)||(37754091-37754169)
chr3 (213-290)||(23196401-23196478)
chr3 (22-129)||(7398866-7398973)
chr3 (10-73)||(37758491-37758554)
chr3 (243-305)||(23240057-23240119)
chr3 (24-121)||(7443696-7443793)
chr3 (33-138)||(9609046-9609151)
[»] chr6 (4 HSPs)
chr6 (1-139)||(19118242-19118380)
chr6 (1-139)||(19125551-19125689)
chr6 (39-106)||(17367595-17367662)
chr6 (18-90)||(17361267-17361339)
[»] chr2 (1 HSPs)
chr2 (27-131)||(33037401-33037505)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 23235737 - 23235427
Alignment:
Q  1 atctcccgctcgaattggtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23235737 atctcccgctcgaattggtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttc 23235638  T
Q  101 tgatcccaatttcgctaagaaacaccttcgcttatcaaccaccagcggcaacctcgtcttaacctactttgatgatactattaataggaagccaacacta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  23235637 tgatcccaatttcgctaagaaacaccttcgcttatcaaccaccagccgcaacctcatcttaacctactttgatgatactattgataggaagccaacacta 23235538  T
Q  201 gtcttttaccggcttcgctccatttttcaccaaagtcgctccatttttaattctgtaacggttaaaccgacccaactacactatcctttttacccactat 300  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |||||||||    
T  23235537 gtcttttaccggcttcactccatttttcaccgaagtcgctccatttttaactctgtaacggttaaacccacccaactacactatctttttgacccactat 23235438  T
Q  301 acagtattatc 311  Q
    |||||||||||    
T  23235437 acagtattatc 23235427  T

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Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 23231845 - 23231543
Alignment:
Q  1 atctcccgctcgaattggtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||| || ||    
T  23231845 atctcccgctcgaattggtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgtctcagtaagtccttcaataccctaatctc 23231746  T
Q  101 tgatcccaatttcgctaagaaacaccttcgcttatcaaccaccagcggcaacctcgtcttaacctactttgatgatactattaataggaagccaacacta 200  Q
    ||||||||||||||| |||||||||||||||||||||| |||| || |||||||| |||||||||||||||||||||||  | ||| |||| |||| |||    
T  23231745 tgatcccaatttcgcaaagaaacaccttcgcttatcaatcacccgccgcaacctcatcttaacctactttgatgatacttatgatatgaagtcaacgcta 23231646  T
Q  201 gtcttttaccggcttcgctccatttttcaccaaagtcgctccatttttaattctgtaacggttaaaccgacccaactacactatcctttttacccactat 300  Q
     ||||||||||||||| ||||||||||||||    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| | |||||||    
T  23231645 atcttttaccggcttcactccatttttcacccgcttcgctccatttttaactctgtaacagttaaaccgacccaactacactatccttttgatccactat 23231546  T
Q  301 aca 303  Q
    |||    
T  23231545 aca 23231543  T

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Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 23196200 - 23196339
Alignment:
Q  3 ctcccgctcgaattggtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctg 102  Q
    |||||| ||||| | |||||||||||||||||||| || ||||||| | ||||||||||||| |||||||| ||||||| |||||||| ||| |||||||    
T  23196200 ctcccgttcgaactagtggcagagattctatgcaggctccctgtcatgttcctcctacaactacgatgcctcagtaagttcttcaatacccttatttctg 23196299  T
Q  103 atcccaatttcgctaagaaacaccttcgcttatcaaccac 142  Q
    |||| || ||||||||||||||||||||||||||||||||    
T  23196300 atccaaagttcgctaagaaacaccttcgcttatcaaccac 23196339  T

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Target: chr3; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 23240271 - 23240162
Alignment:
Q  64 ttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaaacaccttcgcttatcaaccaccagcggcaacctcgtcttaac 163  Q
    |||||||||| |||||||||||||||| ||| |||||||||||  |||||| |||||||||||||||||||||||||||| |  |||||||| |||||||    
T  23240271 ttcgatgcctcagtaagtccttcaataccctaatttctgatccttatttcgttaagaaacaccttcgcttatcaaccacccgaagcaacctcatcttaac 23240172  T
Q  164 ctactttgat 173  Q
    ||||||||||    
T  23240171 ctactttgat 23240162  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 23226514 - 23226400
Alignment:
Q  1 atctcccgctcgaattggtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttc 100  Q
    ||||||| ||||||||| |  ||||||||||||| || || || |||||| ||||| ||||||||||||| || ||| ||||||| |||| ||| |||||    
T  23226514 atctcccactcgaattgatctcagagattctatgtaggctccccgtcaagatcctcttacaacttcgatgtctcagttagtccttgaatatcctaatttc 23226415  T
Q  101 tgatcccaatttcgc 115  Q
    |||||||| ||||||    
T  23226414 tgatcccactttcgc 23226400  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 37754169 - 37754091
Alignment:
Q  10 tcgaattggtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaa 88  Q
    |||||||||| ||||| |||||||||||||| ||||||||| | ||| ||||||| || |||||  |||||||||||||    
T  37754169 tcgaattggtcgcagaaattctatgcagactccctgtcaagttactcttacaactccggtgcctctgtaagtccttcaa 37754091  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 213 - 290
Target Start/End: Original strand, 23196401 - 23196478
Alignment:
Q  213 cttcgctccatttttcaccaaagtcgctccatttttaattctgtaacggttaaaccgacccaactacactatcctttt 290  Q
    |||| ||||| |||||||||| ||   ||||||||||| |||||||| |||||||| |||||| ||| ||||||||||    
T  23196401 cttcactccacttttcaccaatgtgattccatttttaactctgtaaccgttaaacctacccaaatacgctatcctttt 23196478  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 129
Target Start/End: Complemental strand, 7398973 - 7398866
Alignment:
Q  22 cagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaa 121  Q
    |||||||||| || || || || || ||||| ||||| ||||||||||||||  |||||| |||||||| ||| || |||||| |||| ||  | |||||    
T  7398973 cagagattctgtgtaggctcccagtgaagcttctccttcaacttcgatgcctctgtaagttcttcaatacccttatctctgattccaaatttacaaagaa 7398874  T
Q  122 acaccttc 129  Q
    ||||||||    
T  7398873 acaccttc 7398866  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 37758554 - 37758491
Alignment:
Q  10 tcgaattggtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgcct 73  Q
    |||| ||||||||||| |||||||| || |||||||||||| | ||| ||||||| ||||||||    
T  37758554 tcgatttggtggcagaaattctatgtaggcttcctgtcaagttactcttacaactccgatgcct 37758491  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 305
Target Start/End: Complemental strand, 23240119 - 23240057
Alignment:
Q  243 atttttaattctgtaacggttaaaccgacccaactacactatcctttttacccactatacagt 305  Q
    |||||||| |||| ||| |||||||| | |||||| |||||||||||| ||||| ||||||||    
T  23240119 atttttaactctgcaacagttaaacccatccaactgcactatccttttgacccaatatacagt 23240057  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 7443793 - 7443696
Alignment:
Q  24 gagattctatgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaa 121  Q
    |||||||| ||||| |||||||| ||  | ||| |||||||||| |||||  |||||| |||||||    | |||||||||||||||||||| |||||    
T  7443793 gagattctctgcaggcttcctgtgaaattactcatacaacttcggtgcctctgtaagttcttcaattctttaatttctgatcccaatttcgccaagaa 7443696  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 138
Target Start/End: Complemental strand, 9609151 - 9609046
Alignment:
Q  33 tgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaaacaccttcgct 132  Q
    ||||||||||| || ||||| ||  | || ||||| |||||| | || ||||||||| |||| ||||| ||||| || ||||| ||||| |||||||| |    
T  9609151 tgcagacttccggtaaagctactagtgcagcttcggtgccttggcaaatccttcaattacctaatttcagatccgaaattcgccaagaagcaccttcgtt 9609052  T
Q  133 tatcaa 138  Q
    ||||||    
T  9609051 tatcaa 9609046  T

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Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 19118242 - 19118380
Alignment:
Q  1 atctcccgctcgaattggtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttc 100  Q
    |||||||| ||||| |||||||||||||||| ||||| ||||| || ||||||||| ||||||||||||| |  ||||||||| |||||| ||| |||||    
T  19118242 atctcccgttcgaactggtggcagagattctgtgcaggcttcccgtgaagctcctcatacaacttcgatgtcaaagtaagtccctcaataccctaatttc 19118341  T
Q  101 tgatcccaatttcgctaagaaacaccttcgcttatcaac 139  Q
     |||||||| ||||| ||||||||||||||| |||||||    
T  19118342 cgatcccaaattcgcaaagaaacaccttcgcctatcaac 19118380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 19125551 - 19125689
Alignment:
Q  1 atctcccgctcgaattggtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttc 100  Q
    |||||||  ||||| |||| ||||||||||| ||||| ||||| || ||||||||| ||||||||||||| |  ||||||||| |||||| ||| |||||    
T  19125551 atctcccattcgaactggtcgcagagattctgtgcaggcttcccgtgaagctcctcgtacaacttcgatgtcagagtaagtccctcaataccctaatttc 19125650  T
Q  101 tgatcccaatttcgctaagaaacaccttcgcttatcaac 139  Q
    ||||||||  ||||  ||||||||||||||| |||||||    
T  19125651 tgatcccatcttcgtgaagaaacaccttcgcctatcaac 19125689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 106
Target Start/End: Original strand, 17367595 - 17367662
Alignment:
Q  39 cttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcc 106  Q
    ||||| |||||||||||| |||||||||||||  | |||||||| |||||| |||| |||||||||||    
T  17367595 cttcccgtcaagctcctcatacaacttcgatgtttaagtaagtctttcaatgacctaatttctgatcc 17367662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 17361267 - 17361339
Alignment:
Q  18 gtggcagagattctatgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaata 90  Q
    |||| ||| ||||| || || ||||| |||||||||||| | |||||||||||||  ||||||||||| ||||    
T  17361267 gtggaagaaattctgtgtaggcttccagtcaagctcctctttcaacttcgatgccaaagtaagtcctttaata 17361339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 33037401 - 33037505
Alignment:
Q  27 attctatgcagacttcctgtcaagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaaacacc 126  Q
    ||||||||||||||||| || || |||||| | ||||||||||| ||  |||||||  |||||    | ||||||||||| || |||||||||||||| |    
T  33037401 attctatgcagacttccggtaaaactcctcattcaacttcgatgtctctgtaagtctatcaattcgttaatttctgatcctaaattcgctaagaaacatc 33037500  T
Q  127 ttcgc 131  Q
    |||||    
T  33037501 ttcgc 33037505  T

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