View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17168_high_56 (Length: 313)

Name: NF17168_high_56
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17168_high_56
NF17168_high_56
[»] chr6 (11 HSPs)
chr6 (10-299)||(11193370-11193659)
chr6 (10-179)||(13022110-13022279)
chr6 (10-179)||(12991483-12991652)
chr6 (90-166)||(13004414-13004491)
chr6 (40-89)||(24469620-24469670)
chr6 (108-169)||(6512408-6512469)
chr6 (28-91)||(21845921-21845985)
chr6 (28-86)||(22404482-22404541)
chr6 (28-89)||(23230191-23230253)
chr6 (36-89)||(24479842-24479896)
chr6 (24-60)||(18171524-18171560)
[»] chr4 (27 HSPs)
chr4 (12-179)||(37741393-37741561)
chr4 (82-178)||(48014833-48014929)
chr4 (187-258)||(47410586-47410657)
chr4 (32-97)||(25096114-25096179)
chr4 (258-299)||(47410430-47410471)
chr4 (82-144)||(12782142-12782205)
chr4 (82-144)||(15430666-15430729)
chr4 (82-144)||(15437280-15437343)
chr4 (82-144)||(21419015-21419078)
chr4 (82-144)||(40794228-40794291)
chr4 (41-89)||(17711128-17711177)
chr4 (36-91)||(11252352-11252407)
chr4 (82-144)||(3718372-3718435)
chr4 (90-144)||(14571062-14571117)
chr4 (28-86)||(16928733-16928792)
chr4 (90-141)||(19861196-19861247)
chr4 (90-133)||(40617721-40617764)
chr4 (28-81)||(8968305-8968359)
chr4 (99-169)||(53093733-53093803)
chr4 (108-141)||(37104168-37104201)
chr4 (30-89)||(1832278-1832338)
chr4 (28-60)||(9849962-9849994)
chr4 (33-88)||(10108062-10108118)
chr4 (109-141)||(12237394-12237426)
chr4 (28-79)||(15047583-15047635)
chr4 (28-79)||(15106789-15106841)
chr4 (109-141)||(19865571-19865603)
[»] chr3 (19 HSPs)
chr3 (28-179)||(11636111-11636261)
chr3 (83-179)||(22994495-22994591)
chr3 (82-144)||(9380047-9380110)
chr3 (36-87)||(18747639-18747690)
chr3 (82-144)||(31548587-31548650)
chr3 (82-131)||(3839843-3839892)
chr3 (99-179)||(11784065-11784146)
chr3 (28-88)||(34276666-34276727)
chr3 (82-131)||(41976371-41976420)
chr3 (82-144)||(16243202-16243265)
chr3 (82-179)||(28008844-28008942)
chr3 (82-144)||(54736751-54736814)
chr3 (82-143)||(29344673-29344735)
chr3 (121-181)||(15196137-15196198)
chr3 (109-141)||(10107542-10107574)
chr3 (109-141)||(17532597-17532629)
chr3 (146-182)||(30220878-30220914)
chr3 (109-141)||(52198345-52198377)
chr3 (82-144)||(53815007-53815071)
[»] scaffold0009 (1 HSPs)
scaffold0009 (82-179)||(38801-38898)
[»] chr2 (9 HSPs)
chr2 (28-89)||(28930083-28930145)
chr2 (28-97)||(29144443-29144513)
chr2 (30-97)||(22378046-22378114)
chr2 (28-97)||(21905535-21905605)
chr2 (28-86)||(27907751-27907810)
chr2 (28-87)||(18758110-18758170)
chr2 (42-89)||(27540491-27540539)
chr2 (109-141)||(15466210-15466242)
chr2 (24-60)||(18120803-18120839)
[»] chr7 (24 HSPs)
chr7 (36-97)||(4450488-4450549)
chr7 (82-168)||(18563346-18563434)
chr7 (28-97)||(11804508-11804578)
chr7 (82-144)||(9273935-9273998)
chr7 (82-144)||(9865543-9865606)
chr7 (28-81)||(3585757-3585811)
chr7 (28-89)||(25692598-25692660)
chr7 (82-131)||(9080426-9080475)
chr7 (10-97)||(6046319-6046406)
chr7 (90-144)||(17730009-17730064)
chr7 (90-144)||(20081549-20081604)
chr7 (10-57)||(23298144-23298191)
chr7 (36-89)||(8052655-8052709)
chr7 (28-85)||(39270501-39270559)
chr7 (24-64)||(8317690-8317730)
chr7 (36-86)||(10611529-10611581)
chr7 (24-64)||(13287959-13287999)
chr7 (61-89)||(18986970-18986998)
chr7 (61-89)||(19001598-19001626)
chr7 (30-89)||(20175906-20175966)
chr7 (28-87)||(26249303-26249363)
chr7 (109-141)||(26556550-26556582)
chr7 (82-144)||(45288038-45288102)
chr7 (82-144)||(45291374-45291438)
[»] chr8 (8 HSPs)
chr8 (28-89)||(15176657-15176719)
chr8 (28-89)||(23868055-23868117)
chr8 (18-89)||(24389556-24389627)
chr8 (82-144)||(12582254-12582317)
chr8 (31-89)||(28858649-28858708)
chr8 (82-179)||(2559800-2559898)
chr8 (28-89)||(13313473-13313535)
chr8 (10-60)||(24091131-24091181)
[»] chr5 (19 HSPs)
chr5 (82-144)||(2837576-2837639)
chr5 (36-97)||(24658517-24658579)
chr5 (90-144)||(32837119-32837174)
chr5 (28-97)||(28666301-28666371)
chr5 (41-89)||(24320749-24320798)
chr5 (12-60)||(19052895-19052943)
chr5 (82-144)||(18031746-18031809)
chr5 (82-144)||(21827941-21828004)
chr5 (90-144)||(22937964-22938019)
chr5 (121-179)||(26908229-26908288)
chr5 (90-144)||(37214802-37214857)
chr5 (28-89)||(23338750-23338812)
chr5 (36-97)||(25400954-25401016)
chr5 (82-131)||(21336642-21336691)
chr5 (24-61)||(23215081-23215118)
chr5 (82-131)||(40916787-40916836)
chr5 (108-141)||(42061526-42061559)
chr5 (27-82)||(23387779-23387835)
chr5 (82-144)||(39191367-39191431)
[»] chr1 (6 HSPs)
chr1 (104-169)||(34733186-34733251)
chr1 (36-89)||(15542534-15542588)
chr1 (28-88)||(14782339-14782400)
chr1 (100-171)||(7634897-7634968)
chr1 (28-81)||(9403149-9403203)
chr1 (105-141)||(2793339-2793375)
[»] scaffold0002 (1 HSPs)
scaffold0002 (28-89)||(95433-95495)
[»] scaffold0555 (1 HSPs)
scaffold0555 (10-62)||(6247-6299)
[»] scaffold0270 (3 HSPs)
scaffold0270 (82-144)||(960-1024)
scaffold0270 (90-144)||(4329-4384)
scaffold0270 (90-144)||(11459-11514)
[»] scaffold1993 (1 HSPs)
scaffold1993 (82-144)||(1081-1144)
[»] scaffold0005 (1 HSPs)
scaffold0005 (90-144)||(246259-246314)
[»] scaffold0757 (1 HSPs)
scaffold0757 (82-144)||(4599-4663)
[»] scaffold0035 (1 HSPs)
scaffold0035 (109-141)||(61637-61669)
[»] scaffold0016 (1 HSPs)
scaffold0016 (27-82)||(4633-4689)


Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 299
Target Start/End: Original strand, 11193370 - 11193659
Alignment:
Q  10 ataattcttccctgttgtaagtcttctgagacctcttgaatattcattcttgtcttcccaaagtcttgacaattcttcagtttttctttcttttcttact 109  Q
    |||||| |||||| ||||||||||||||||  ||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||  |||||    
T  11193370 ataatttttccctattgtaagtcttctgaggactcgtgaatcttcattcttgtcttcccaaggtcttgacaattcttcagtttttcttgctttaattact 11193469  T
Q  110 gtttaagcttgcttgtgaactccaaatatcataaatttacataaaaaattacgtaatgacaagatgtcattaggttatatgataacatgggttctggggt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11193470 gtttaagcttgcttgtgaactccaaatatcataaatttacataaaaaattacgtaatgacaagatgtcatcaggttatatgataacatgggttctggggt 11193569  T
Q  210 tgattatgatgcatttggccattcatctaccacattgtcagatagtgcttcttgcggcaccaataaagaaggggagtcatttctagtgga 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11193570 tgattatgatgcatttggccattcatctaccacattgtcagatagtgcttcttgcggcaccaataaagaaggggagtcatttctagtgga 11193659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 13022110 - 13022279
Alignment:
Q  10 ataattcttccctgttgtaagtcttctgagacctcttgaatattcattcttgtcttcccaaagtcttgacaattcttcagtttttctttcttttcttact 109  Q
    ||||||| ||||| |||||||||||||||| |||||||||| ||||||||| |||||| || |||||||||||||||||||||||| | ||||||||  |    
T  13022110 ataattcctccctattgtaagtcttctgaggcctcttgaatcttcattcttttcttcctaaggtcttgacaattcttcagtttttcatgcttttcttgtt 13022209  T
Q  110 gtttaagcttgcttgtgaactccaaatatcataaatttacataaaaaattacgtaatgacaagatgtcat 179  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||    
T  13022210 gtttaagcttgcttgtgaactccaaatatcatgaatttacattaaaaattacgtaatgacaatatgtcat 13022279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 12991483 - 12991652
Alignment:
Q  10 ataattcttccctgttgtaagtcttctgagacctcttgaatattcattcttgtcttcccaaagtcttgacaattcttcagtttttctttcttttcttact 109  Q
    ||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||| || ||||||||| ||||||| |||||||| ||||||||  |    
T  12991483 ataattcctccctgttgtaagtcttctgaggcctcttgaatcttcattcttgtcttcctaaggtcttgacagttcttcaatttttcttgcttttcttgtt 12991582  T
Q  110 gtttaagcttgcttgtgaactccaaatatcataaatttacataaaaaattacgtaatgacaagatgtcat 179  Q
    | |||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| ||||||||||||    
T  12991583 gattaagcttgcttgtgaactccaaatatcatgaatttacattaaaaaatacgtaattacaagatgtcat 12991652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 13004491 - 13004414
Alignment:
Q  90 tttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaatttacataaaaaattacgtaat 166  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||  |||||| |||||||||||||    
T  13004491 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaaaatacatataaaattacgtaat 13004414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 24469620 - 24469670
Alignment:
Q  40 acctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    ||||||||||| |||||||||| |||||||| |||||||||||||||||||    
T  24469620 acctcttgaatcttcattcttggtcttcccatagtcttgacaattcttcag 24469670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 6512469 - 6512408
Alignment:
Q  108 ctgtttaagcttgcttgtgaactccaaatatcataaatttacataaaaaattacgtaatgac 169  Q
    |||||||||||||||||||||||| ||| ||||| ||||||||  |||||| ||| ||||||    
T  6512469 ctgtttaagcttgcttgtgaactcaaaagatcatgaatttacaataaaaataacgaaatgac 6512408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 21845985 - 21845921
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcagtt 91  Q
    |||||| || || |||||||||| || |||||| ||||||||||||||||||||||| |||||||    
T  21845985 aagtctcctaaggcctcttgaatctttattctttgtcttcccaaagtcttgacaatttttcagtt 21845921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 22404541 - 22404482
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattctt 86  Q
    |||||| ||||| |||||||||| |||||||||| ||||||||||||||| |||| ||||    
T  22404541 aagtctcctgaggcctcttgaatcttcattcttggtcttcccaaagtcttcacaaatctt 22404482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 23230253 - 23230191
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    |||||| || || |||||||||| |||||| ||| ||| ||||||||||||||||||||||||    
T  23230253 aagtctccttaggcctcttgaatcttcattgttggtctccccaaagtcttgacaattcttcag 23230191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 24479842 - 24479896
Alignment:
Q  36 tgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    |||||||| |||||| ||| |||||| |||||||| |||||||||||||||||||    
T  24479842 tgagacctattgaatcttctttcttggtcttcccatagtcttgacaattcttcag 24479896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 18171560 - 18171524
Alignment:
Q  24 ttgtaagtcttctgagacctcttgaatattcattctt 60  Q
    ||||||||||||||||  |||||||||||||||||||    
T  18171560 ttgtaagtcttctgaggtctcttgaatattcattctt 18171524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 179
Target Start/End: Original strand, 37741393 - 37741561
Alignment:
Q  12 aattcttccctgttgtaagtcttctgagacctcttgaatattcattcttgtcttcccaaagtcttgacaattcttcagtttttctttcttttcttactgt 111  Q
    ||||| ||||||||||||||||||| || |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||  ||||||| ||||    
T  37741393 aattcctccctgttgtaagtcttctaaggcctcttgaatcttcattcttgtcttcccaaggtcttgacaattcttcagtttttcttgtttttcttgctgt 37741492  T
Q  112 ttaagcttgcttgtgaactccaaatatcataaatttaca-taaaaaattacgtaatgacaagatgtcat 179  Q
    |||||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||||| ||||    
T  37741493 ttaagcttgcttgtgaactccaaatatcatgaatttacatttaaaaattacgtaacgacaagatttcat 37741561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 178
Target Start/End: Original strand, 48014833 - 48014929
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactccaaatatcataaatttacataaaaaattacgtaatgacaagatgtca 178  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| ||||||    
T  48014833 ttcttcagtttttcttgcttttcttgttgtataagcttgcttgtgaactccaaataacatgattttacattaaaaattacgtaatgacaaaatgtca 48014929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 47410657 - 47410586
Alignment:
Q  187 tatgataacatgggttctggggttgattatgatgcatttggccattcatctaccacattgtcagatagtgct 258  Q
    |||||||||||||||||| ||||||| |||||||||  ||||||||||||||||||| ||||| ||||||||    
T  47410657 tatgataacatgggttctagggttgactatgatgcacctggccattcatctaccacaatgtcatatagtgct 47410586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 25096114 - 25096179
Alignment:
Q  32 cttctgagacctcttgaatattcattcttgtcttcccaaagtcttgacaattcttcagtttttctt 97  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||||||||||||| |||| |||||    
T  25096114 cttctgaggcctcttgaatcttcattcttgtcttcccaaggtcttgacaattcttgagttgttctt 25096179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 47410471 - 47410430
Alignment:
Q  258 ttcttgcggcaccaataaagaaggggagtcatttctagtgga 299  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  47410471 ttcttgcggcacaaataaagaaggggagtcatttctagtgga 47410430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 12782205 - 12782142
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||||||||||| |||||||| ||| |||||||||||||| |||||  ||||||||||||    
T  12782205 ttcttcagtttttcttgcttttcttgctgcttaagcttgcttgtaaactcaaaaatatcataaa 12782142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 15430666 - 15430729
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||| ||||||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  15430666 ttctccagtttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 15430729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 15437280 - 15437343
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||| ||||||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  15437280 ttctccagtttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 15437343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 21419078 - 21419015
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||| ||||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  21419078 ttcttcggtttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 21419015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 40794291 - 40794228
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||| ||||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  40794291 ttcttcggtttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 40794228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 17711128 - 17711177
Alignment:
Q  41 cctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    |||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  17711128 cctcttgaatcttcattcttggtcttccgaaagtcttgacaattcttcag 17711177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 11252407 - 11252352
Alignment:
Q  36 tgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcagtt 91  Q
    |||| ||||||| |||||||||||| ||||||||||||||||||||| |||||||||    
T  11252407 tgaggcctcttgtatattcattctttgtcttcccaaagtcttgacaa-tcttcagtt 11252352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 3718435 - 3718372
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||| ||||||||| ||||||||  || ||||||||||||||||||||  ||||||||||||    
T  3718435 ttcttcggtttttcttgcttttcttgttgcttaagcttgcttgtgaactcaaaaatatcataaa 3718372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 14571117 - 14571062
Alignment:
Q  90 tttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  14571117 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 14571062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 16928733 - 16928792
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattctt 86  Q
    |||||||||||| |||||||||| ||||||||| ||||| |||||||||| |||| ||||    
T  16928733 aagtcttctgaggcctcttgaatcttcattcttggtcttgccaaagtcttcacaaatctt 16928792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 19861196 - 19861247
Alignment:
Q  90 tttttctttcttttcttactgtttaagcttgcttgtgaactccaaatatcat 141  Q
    |||||||| ||||  || |||||||||||||||||||||||| |||||||||    
T  19861196 tttttcttgctttctttgctgtttaagcttgcttgtgaactcaaaatatcat 19861247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 40617721 - 40617764
Alignment:
Q  90 tttttctttcttttcttactgtttaagcttgcttgtgaactcca 133  Q
    |||||||| |||||||| ||| ||||||||||||||||||||||    
T  40617721 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcca 40617764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 8968359 - 8968305
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaa 81  Q
    ||||||||||||  ||||||||| ||||||||| |||||||||||||||| ||||    
T  8968359 aagtcttctgaggtctcttgaatcttcattcttggtcttcccaaagtcttcacaa 8968305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 53093803 - 53093733
Alignment:
Q  99 cttttcttactgtttaagcttgcttgtgaactccaaatatcataaatttacataaaaaattacgtaatgac 169  Q
    |||| ||| |||||||||||||||||||||||| ||| | ||| ||||||||  |||||| | ||||||||    
T  53093803 ctttccttgctgtttaagcttgcttgtgaactcaaaagaccatgaatttacaataaaaataatgtaatgac 53093733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 37104168 - 37104201
Alignment:
Q  108 ctgtttaagcttgcttgtgaactccaaatatcat 141  Q
    |||||||||||||||||||||||| |||||||||    
T  37104168 ctgtttaagcttgcttgtgaactcaaaatatcat 37104201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 1832338 - 1832278
Alignment:
Q  30 gtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    |||||||||| |||||||||||||| |||||| ||||||||| || || |||| |||||||    
T  1832338 gtcttctgaggcctcttgaatattctttcttgatcttcccaaggttttcacaagtcttcag 1832278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 9849994 - 9849962
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattctt 60  Q
    ||||||||||||||||||||||| |||||||||    
T  9849994 aagtcttctgagacctcttgaattttcattctt 9849962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 10108062 - 10108118
Alignment:
Q  33 ttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttca 88  Q
    ||||||| ||||||| |||||||||| || ||||||||||||||| |||| ||||||    
T  10108062 ttctgaggcctcttgcatattcattcatggtcttcccaaagtcttcacaaatcttca 10108118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 12237426 - 12237394
Alignment:
Q  109 tgtttaagcttgcttgtgaactccaaatatcat 141  Q
    ||||||||||||||||||||||| |||||||||    
T  12237426 tgtttaagcttgcttgtgaactcaaaatatcat 12237394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 79
Target Start/End: Original strand, 15047583 - 15047635
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgac 79  Q
    |||||||  ||| |||||||||| |||||||||| ||||||||||||||||||    
T  15047583 aagtctttcgaggcctcttgaatcttcattcttgatcttcccaaagtcttgac 15047635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 15106841 - 15106789
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgac 79  Q
    |||||||  ||| |||||||||| |||||||||| ||||||||||||||||||    
T  15106841 aagtctttcgaggcctcttgaatcttcattcttgatcttcccaaagtcttgac 15106789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 19865571 - 19865603
Alignment:
Q  109 tgtttaagcttgcttgtgaactccaaatatcat 141  Q
    ||||||||||||||||||||||| |||||||||    
T  19865571 tgtttaagcttgcttgtgaactcaaaatatcat 19865603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 28 - 179
Target Start/End: Complemental strand, 11636261 - 11636111
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttgtcttcccaaagtcttgacaattcttcagtttttctttcttttcttactgtttaagcttgcttgtga 127  Q
    |||||||||||| |||||||||| |||||||||||||||| || |||||||||||||||||||||||||| ||||||||  |||||||||||||||||||    
T  11636261 aagtcttctgaggcctcttgaatcttcattcttgtcttcctaaggtcttgacaattcttcagtttttcttgcttttctt-gtgtttaagcttgcttgtga 11636163  T
Q  128 actccaaatatcataaatttacataaaaaattacgtaatgacaagatgtcat 179  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  11636162 actctaaatatcatgaatttacattaaaaattacgtaatgacaagatatcat 11636111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 22994495 - 22994591
Alignment:
Q  83 tcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactccaaatatcataaatttacataaaaaattacgtaatgacaagatgtcat 179  Q
    ||||||||||||||| |||| ||| ||||||||||||||||||| |||| |||||||||||  |||||  |||||||| ||||||||||| ||||||    
T  22994495 tcttcagtttttcttgctttccttgctgtttaagcttgcttgtggactcaaaatatcataatattacactaaaaattatgtaatgacaaggtgtcat 22994591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 9380110 - 9380047
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||| ||||||||| ||||||||| || ||||||||||||||||||||  ||||||||||||    
T  9380110 ttcttcggtttttcttgcttttcttattgcttaagcttgcttgtgaactcaaaaatatcataaa 9380047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 18747639 - 18747690
Alignment:
Q  36 tgagacctcttgaatattcattcttgtcttcccaaagtcttgacaattcttc 87  Q
    |||| |||||||||| |||||| || ||||||||||||||||||||||||||    
T  18747639 tgaggcctcttgaatcttcatttttatcttcccaaagtcttgacaattcttc 18747690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 31548650 - 31548587
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    ||||||| |||||||| |||||||||||| ||||||||| ||||||||||  ||||||||||||    
T  31548650 ttcttcaatttttcttgcttttcttactgcttaagcttggttgtgaactcaaaaatatcataaa 31548587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 3839892 - 3839843
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc 131  Q
    |||||| ||||||||| |||||||| ||| ||||||||||||||||||||    
T  3839892 ttcttcggtttttcttgcttttcttgctgcttaagcttgcttgtgaactc 3839843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 11784146 - 11784065
Alignment:
Q  99 cttttcttactgtttaagcttgcttgtgaactccaaata-tcataaatttacataaaaaattacgtaatgacaagatgtcat 179  Q
    |||||||| ||| ||||| |  |||||||| |||||||  | || ||||||||||||| |||||||||||||||||||||||    
T  11784146 cttttcttgctgcttaagttgccttgtgaattccaaattgtgatcaatttacataaaagattacgtaatgacaagatgtcat 11784065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 34276727 - 34276666
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttca 88  Q
    |||||| ||||| |||||||| | |||||||||| |||||||| ||||||||||||||||||    
T  34276727 aagtctcctgaggcctcttgactcttcattcttggtcttcccacagtcttgacaattcttca 34276666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 41976420 - 41976371
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc 131  Q
    ||||||||||||| || |||||||| |||||||| |||||||||||||||    
T  41976420 ttcttcagtttttgttgcttttcttgctgtttaatcttgcttgtgaactc 41976371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 16243265 - 16243202
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    ||||| |||||||||| |||||||| ||| |||| |||||||||||||||  ||||||||||||    
T  16243265 ttctttagtttttcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaa 16243202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 28008844 - 28008942
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactccaaa-tatcataaatttacataaaa-aattacgtaatgacaagatgtcat 179  Q
    |||||||||||||||  |||||||| |||  |||| |  ||||||||||||||| | | || || |||||||||| ||||||||||||||||||||||||    
T  28008844 ttcttcagtttttctg-cttttcttgctgcataagttgccttgtgaactccaaaatgtgatcaaattacataaaaaaattacgtaatgacaagatgtcat 28008942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 54736751 - 54736814
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactccaaa-tatcataaa 144  Q
    ||||||||||||| || ||||||||  || |||||||||||||||||||| ||| |||||||||    
T  54736751 ttcttcagttttttttgcttttcttgttgcttaagcttgcttgtgaactcaaaagtatcataaa 54736814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 29344673 - 29344735
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataa 143  Q
    ||||||| |||||||| |||||||| ||| |||| |||||||||||||||  |||||||||||    
T  29344673 ttcttcaatttttcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataa 29344735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 181
Target Start/End: Original strand, 15196137 - 15196198
Alignment:
Q  121 cttgtgaactccaaa-tatcataaatttacataaaaaattacgtaatgacaagatgtcatta 181  Q
    ||||||||||||||| | | || || ||||||| |||||||||||||||| |||||||||||    
T  15196137 cttgtgaactccaaaatgtgatcaaattacatagaaaattacgtaatgacgagatgtcatta 15196198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 10107542 - 10107574
Alignment:
Q  109 tgtttaagcttgcttgtgaactccaaatatcat 141  Q
    ||||||||||||||||||||||| |||||||||    
T  10107542 tgtttaagcttgcttgtgaactcaaaatatcat 10107574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 17532597 - 17532629
Alignment:
Q  109 tgtttaagcttgcttgtgaactccaaatatcat 141  Q
    ||||||||||||||||||||||| |||||||||    
T  17532597 tgtttaagcttgcttgtgaactcaaaatatcat 17532629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 182
Target Start/End: Original strand, 30220878 - 30220914
Alignment:
Q  146 ttacataaaaaattacgtaatgacaagatgtcattag 182  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  30220878 ttacattaaaaattacgtaatgacgagatgtcattag 30220914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 52198377 - 52198345
Alignment:
Q  109 tgtttaagcttgcttgtgaactccaaatatcat 141  Q
    ||||||||||||||||||||||| |||||||||    
T  52198377 tgtttaagcttgcttgtgaactcaaaatatcat 52198345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 53815071 - 53815007
Alignment:
Q  82 ttcttcag-tttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||| ||||||||  ||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  53815071 ttcttcagctttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 53815007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 38801 - 38898
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactccaaatatcataaatttacataaaaaattacgtaatgacaagatgtcat 179  Q
    |||||||||||||| ||||||| ||  ||||||||||||||||||||||||||||| ||| | ||||||  |||||||| |||||||| |||||||||    
T  38801 ttcttcagtttttccttctttttttgttgtttaagcttgcttgtgaactccaaataccatgattttacaataaaaattatgtaatgacgagatgtcat 38898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 28930083 - 28930145
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcag 89  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28930083 aagtcttctgaggcctcttgaatattcattcttggtcttcccaaagtcttgacaattcttcag 28930145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 29144443 - 29144513
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcagtttttctt 97  Q
    |||||| ||||  |||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||    
T  29144443 aagtctcctgatgcctcttgaatcttcattctttgtcttcccaaagtcttgacaattcttcagttgttctt 29144513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 22378114 - 22378046
Alignment:
Q  30 gtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcagtttttctt 97  Q
    |||| ||||| |||||||||| ||||||||| |||||||||| |||||||||||||||||||| |||||    
T  22378114 gtctcctgaggcctcttgaatcttcattctttgtcttcccaaggtcttgacaattcttcagttgttctt 22378046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 21905535 - 21905605
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcagtttttctt 97  Q
    |||||| ||||| |||||||||| ||||||||| |||||||||| ||||||||||||||| |||| |||||    
T  21905535 aagtctcctgaggcctcttgaatcttcattctttgtcttcccaatgtcttgacaattctttagttgttctt 21905605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 27907810 - 27907751
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattctt 86  Q
    |||||| ||||| |||||||||| ||||| |||| |||||||||||||||||||||||||    
T  27907810 aagtctcctgaggcctcttgaatcttcatccttggtcttcccaaagtcttgacaattctt 27907751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 87
Target Start/End: Original strand, 18758110 - 18758170
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttc 87  Q
    |||||| ||||| |||||||||| |||||||||| ||||||||||||||| |||| |||||    
T  18758110 aagtctcctgaggcctcttgaatcttcattcttgttcttcccaaagtcttcacaagtcttc 18758170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 89
Target Start/End: Complemental strand, 27540539 - 27540491
Alignment:
Q  42 ctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||||||    
T  27540539 ctcttgaatctttattcttggtcttcccaaagtcttgacaattcttcag 27540491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 15466242 - 15466210
Alignment:
Q  109 tgtttaagcttgcttgtgaactccaaatatcat 141  Q
    ||||||||||||||||||||||| |||||||||    
T  15466242 tgtttaagcttgcttgtgaactcaaaatatcat 15466210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 18120839 - 18120803
Alignment:
Q  24 ttgtaagtcttctgagacctcttgaatattcattctt 60  Q
    |||||||||||||||| |||||||||| |||||||||    
T  18120839 ttgtaagtcttctgaggcctcttgaatcttcattctt 18120803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 97
Target Start/End: Original strand, 4450488 - 4450549
Alignment:
Q  36 tgagacctcttgaatattcattcttgtcttcccaaagtcttgacaattcttcagtttttctt 97  Q
    |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||    
T  4450488 tgaggcctcttgaatcttcatttttgtcttcccaaagtcttgacaattcttcagttgttctt 4450549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 18563346 - 18563434
Alignment:
Q  82 ttcttcagtttttc--tttcttttcttactgtttaagcttgcttgtgaactccaaatatcataaatttacataaaaaattacgtaatga 168  Q
    |||||||||||||   ||| ||||||| ||| ||||||||||||||||||| || ||| ||| |||||||||||||||||| |||||||    
T  18563346 ttcttcagttttttcattttttttcttgctgcttaagcttgcttgtgaactgcagataccatgaatttacataaaaaattatgtaatga 18563434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 11804508 - 11804578
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcagtttttctt 97  Q
    ||||||||| || ||| |||||| ||||||||| |||||||||||||||||| |||||||||||| |||||    
T  11804508 aagtcttctaagtccttttgaatcttcattctttgtcttcccaaagtcttgaaaattcttcagttgttctt 11804578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 9273935 - 9273998
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactcc-aaatatcataaa 144  Q
    |||||||  ||||||||||||||||  || ||||||||||||||||||||| ||||||||||||    
T  9273935 ttcttcaacttttctttcttttcttggtgcttaagcttgcttgtgaactccaaaatatcataaa 9273998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 9865543 - 9865606
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||||||||||| |||||||| ||| |||| |||||||||||||||  ||||||||||||    
T  9865543 ttcttcagtttttcttgcttttcttgctgcttaatcttgcttgtgaactcaaaaatatcataaa 9865606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 3585811 - 3585757
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaa 81  Q
    ||||||||||||||||||||||| |||||||||  ||||||||||||||| ||||    
T  3585811 aagtcttctgagacctcttgaatcttcattcttattcttcccaaagtcttcacaa 3585757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 25692598 - 25692660
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    |||||||||||| |||||||||| |||||| ||| |||||||||||| || ||||||||||||    
T  25692598 aagtcttctgaggcctcttgaatcttcatttttgatcttcccaaagtattcacaattcttcag 25692660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 9080475 - 9080426
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc 131  Q
    ||||||||||||||||  ||||||| ||| ||||||||||||||||||||    
T  9080475 ttcttcagtttttcttggttttcttgctgcttaagcttgcttgtgaactc 9080426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 6046319 - 6046406
Alignment:
Q  10 ataattcttccctgttgtaagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcagtttttctt 97  Q
    ||||||||||||| || ||||||| ||||| |||||| ||| ||||| ||| |||||||| ||||||| ||||||||| |||| |||||    
T  6046319 ataattcttccctcttataagtctcctgaggcctctttaatcttcatccttggtcttccc-aagtcttcacaattctttagttgttctt 6046406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 17730064 - 17730009
Alignment:
Q  90 tttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  17730064 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 17730009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 20081549 - 20081604
Alignment:
Q  90 tttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  20081549 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 20081604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 23298144 - 23298191
Alignment:
Q  10 ataattcttccctgttgtaagtcttctgagacctcttgaatattcatt 57  Q
    ||||||| ||||| |||||||||||||||| |||||||||| ||||||    
T  23298144 ataattcctccctattgtaagtcttctgaggcctcttgaatcttcatt 23298191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 8052709 - 8052655
Alignment:
Q  36 tgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    |||| ||| |||||| |||||| ||| ||||||||||||||||||||||||||||    
T  8052709 tgaggcctgttgaatcttcatttttggtcttcccaaagtcttgacaattcttcag 8052655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 39270559 - 39270501
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattct 85  Q
    |||||| | ||| |||||||||| |||||||||| ||||| ||||||||||||||||||    
T  39270559 aagtctcccgaggcctcttgaatcttcattcttggtcttctcaaagtcttgacaattct 39270501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 8317730 - 8317690
Alignment:
Q  24 ttgtaagtcttctgagacctcttgaatattcattcttgtct 64  Q
    |||||||||||||||| |||||||||| || ||||||||||    
T  8317730 ttgtaagtcttctgaggcctcttgaatctttattcttgtct 8317690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 86
Target Start/End: Original strand, 10611529 - 10611581
Alignment:
Q  36 tgagacctcttgaatattcattctt-gtcttcccaaagtc-ttgacaattctt 86  Q
    ||||||||||||||| || |||||| |||||||||||||| ||||||||||||    
T  10611529 tgagacctcttgaatctttattcttagtcttcccaaagtctttgacaattctt 10611581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 13287999 - 13287959
Alignment:
Q  24 ttgtaagtcttctgagacctcttgaatattcattcttgtct 64  Q
    |||||||||||||||| |||||||||| || ||||||||||    
T  13287999 ttgtaagtcttctgaggcctcttgaatctttattcttgtct 13287959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 18986998 - 18986970
Alignment:
Q  61 gtcttcccaaagtcttgacaattcttcag 89  Q
    |||||||||||||||||||||||||||||    
T  18986998 gtcttcccaaagtcttgacaattcttcag 18986970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 89
Target Start/End: Complemental strand, 19001626 - 19001598
Alignment:
Q  61 gtcttcccaaagtcttgacaattcttcag 89  Q
    |||||||||||||||||||||||||||||    
T  19001626 gtcttcccaaagtcttgacaattcttcag 19001598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 20175906 - 20175966
Alignment:
Q  30 gtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    |||||| ||| |||||||||| ||||||| || ||||||||||||||| |||||| |||||    
T  20175906 gtcttccgaggcctcttgaatcttcattcatgatcttcccaaagtcttcacaatttttcag 20175966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 26249363 - 26249303
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttc 87  Q
    |||||| ||||  |||||||||| |||||||||| ||||||||||||||| |||| |||||    
T  26249363 aagtctcctgaagcctcttgaatcttcattcttggtcttcccaaagtcttcacaaatcttc 26249303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 26556582 - 26556550
Alignment:
Q  109 tgtttaagcttgcttgtgaactccaaatatcat 141  Q
    ||||||||||||||||||||||| |||||||||    
T  26556582 tgtttaagcttgcttgtgaactcaaaatatcat 26556550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 45288038 - 45288102
Alignment:
Q  82 ttcttcag-tttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||| ||||||||  ||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  45288038 ttcttcagctttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 45288102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 45291374 - 45291438
Alignment:
Q  82 ttcttcag-tttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||| ||||||||  ||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  45291374 ttcttcagctttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 45291438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 15176719 - 15176657
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcag 89  Q
    |||||| ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  15176719 aagtctcctgaggcctcttgaatcttcattctttgtcttcccaaagtcttgacaattcttcag 15176657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 23868117 - 23868055
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    |||||| ||||| |||||||||| |||||||||| ||||||||||||||||| ||||||||||    
T  23868117 aagtctcctgagccctcttgaatcttcattcttggtcttcccaaagtcttgataattcttcag 23868055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 24389556 - 24389627
Alignment:
Q  18 tccctgttgtaagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcag 89  Q
    |||||||||||||||| ||||| |||||||||| ||||||||| ||||| || ||||||| ||||||||||||    
T  24389556 tccctgttgtaagtctcctgaggcctcttgaatcttcattcttggtctt-cctaagtcttcacaattcttcag 24389627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 12582317 - 12582254
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||||||||||| |||||||| ||| |||| |||||||||||||||  ||||||||||||    
T  12582317 ttcttcagtttttcttgcttttctttctgcttaatcttgcttgtgaactcaaaaatatcataaa 12582254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 89
Target Start/End: Original strand, 28858649 - 28858708
Alignment:
Q  31 tcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    |||| |||| ||||||||||||||||||||| ||||||||||||||| || | |||||||    
T  28858649 tcttttgaggcctcttgaatattcattcttgatcttcccaaagtcttcactaatcttcag 28858708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 2559898 - 2559800
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactccaaa-tatcataaatttacataaaaaattacgtaatgacaagatgtcat 179  Q
    ||||||||||||| || |||||||| |||  |||| |  |||||||| |||||| | | || || ||||||| ||||||| ||||||||||||||||||    
T  2559898 ttcttcagttttttttgcttttcttgctgcataagttgccttgtgaaatccaaaatgtgatcaaattacatataaaattatgtaatgacaagatgtcat 2559800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 13313535 - 13313473
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcag 89  Q
    ||||||| ||||  ||||||||||||||||||| ||||||||||| | || ||||||||||||    
T  13313535 aagtcttttgaggtctcttgaatattcattcttggtcttcccaaaatattcacaattcttcag 13313473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 24091181 - 24091131
Alignment:
Q  10 ataattcttccctgttgtaagtcttctgagacctcttgaatattcattctt 60  Q
    ||||||| ||||  |||||||||||||||| |||||||||| |||||||||    
T  24091181 ataattcatcccatttgtaagtcttctgaggcctcttgaatcttcattctt 24091131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 2837576 - 2837639
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactcc-aaatatcataaa 144  Q
    |||||||||||||||| ||||| || ||| ||||||||||||||||||||| ||||||||||||    
T  2837576 ttcttcagtttttcttgcttttattgctgcttaagcttgcttgtgaactccaaaatatcataaa 2837639  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 24658579 - 24658517
Alignment:
Q  36 tgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcagtttttctt 97  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  24658579 tgaggcctcttgaatcttcattctttgtcttcctaaagtcttgacaattcttcagttgttctt 24658517  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 32837174 - 32837119
Alignment:
Q  90 tttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    ||||||||||||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  32837174 tttttctttcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 32837119  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 28666301 - 28666371
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcagtttttctt 97  Q
    |||||| | ||| |||||||||| ||||||||| |||||||||| ||||||| |||||||||||| |||||    
T  28666301 aagtctcccgaggcctcttgaatgttcattctttgtcttcccaatgtcttgataattcttcagttgttctt 28666371  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 24320798 - 24320749
Alignment:
Q  41 cctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| ||||    
T  24320798 cctcttgaatcttcattcttggtcttcccaaagtcttgacaattcgtcag 24320749  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 19052895 - 19052943
Alignment:
Q  12 aattcttccctgttgtaagtcttctgagacctcttgaatattcattctt 60  Q
    ||||| |||||||||||||||| ||||| |||||||||| |||||||||    
T  19052895 aattcctccctgttgtaagtctcctgaggcctcttgaatcttcattctt 19052943  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 18031809 - 18031746
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||||||||||| |||||||| ||| |||| ||||||| |||||||  ||||||||||||    
T  18031809 ttcttcagtttttcttgcttttcttgctgcttaaacttgcttttgaactcgaaaatatcataaa 18031746  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 21827941 - 21828004
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||| ||||||||| |||||||| ||| ||||||||||||| ||||||  ||||||||||||    
T  21827941 ttcttcggtttttcttgcttttcttgctgcttaagcttgcttgcgaactcaaaaatatcataaa 21828004  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 22937964 - 22938019
Alignment:
Q  90 tttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  22937964 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 22938019  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 26908229 - 26908288
Alignment:
Q  121 cttgtgaactccaaat-atcataaatttacataaaaaattacgtaatgacaagatgtcat 179  Q
    |||||||||||||||| || || ||  ||||||||||||||||||||||| |||||||||    
T  26908229 cttgtgaactccaaattatgatcaaaatacataaaaaattacgtaatgactagatgtcat 26908288  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 37214857 - 37214802
Alignment:
Q  90 tttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  37214857 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 37214802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 23338750 - 23338812
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    |||||| |||||  ||||||||| |||||||||| ||||||||||| ||| ||||||||||||    
T  23338750 aagtctcctgaggactcttgaatcttcattcttggtcttcccaaagccttcacaattcttcag 23338812  T

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Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 97
Target Start/End: Complemental strand, 25401016 - 25400954
Alignment:
Q  36 tgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaattcttcagtttttctt 97  Q
    ||||||||||||||| ||||||||| || ||||||||||||| |||| ||||| ||| |||||    
T  25401016 tgagacctcttgaatcttcattcttggtattcccaaagtcttcacaaatcttcggttgttctt 25400954  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 21336642 - 21336691
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc 131  Q
    |||||| ||||||||| ||||||||  || ||||||||||||||||||||    
T  21336642 ttcttcggtttttcttgcttttcttgttgcttaagcttgcttgtgaactc 21336691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 23215118 - 23215081
Alignment:
Q  24 ttgtaagtcttctgagacctcttgaatattcattcttg 61  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  23215118 ttgtaagtcttatgaggcctcttgaatattcattcttg 23215081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 40916787 - 40916836
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactc 131  Q
    |||||| ||||||||| ||||||||  || ||||||||||||||||||||    
T  40916787 ttcttcggtttttcttgcttttcttgttgcttaagcttgcttgtgaactc 40916836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 42061559 - 42061526
Alignment:
Q  108 ctgtttaagcttgcttgtgaactccaaatatcat 141  Q
    |||||||||||||||||||||||| |||||||||    
T  42061559 ctgtttaagcttgcttgtgaactcaaaatatcat 42061526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 82
Target Start/End: Complemental strand, 23387835 - 23387779
Alignment:
Q  27 taagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaat 82  Q
    |||||||  |||| |||||||||| |||| |||| ||||||||||||||||||||||    
T  23387835 taagtctattgaggcctcttgaatcttcactctttgtcttcccaaagtcttgacaat 23387779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 39191431 - 39191367
Alignment:
Q  82 ttcttcagttttt-ctttcttttcttactgtttaagcttgcttgtgaactccaaa-tatcataaa 144  Q
    ||||||||||||| |||  ||||||| ||| |||||||||||||||||||| ||| |||||||||    
T  39191431 ttcttcagttttttcttgtttttcttgctgcttaagcttgcttgtgaactcaaaagtatcataaa 39191367  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 34733186 - 34733251
Alignment:
Q  104 cttactgtttaagcttgcttgtgaactccaaatatcataaatttacataaaaaattacgtaatgac 169  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||||||  |||||| | ||||||||    
T  34733186 cttactgtttaatcttgcttgtgaactcaaaagatcataaatttacaataaaaataatgtaatgac 34733251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 15542588 - 15542534
Alignment:
Q  36 tgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    |||| |||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  15542588 tgaggcctcttgaatcttcattcttggtcttccgaaagtcttgacaattcttcag 15542534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 14782339 - 14782400
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttca 88  Q
    |||||| ||||| ||| |||||| |||||||||| |||||||||||| ||||||||||||||    
T  14782339 aagtctcctgaggccttttgaatcttcattcttggtcttcccaaagttttgacaattcttca 14782400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 7634968 - 7634897
Alignment:
Q  100 ttttcttactgtttaagcttgcttgtgaactccaaatatcataaatttacataaaaaattacgtaatgacaa 171  Q
    |||||||  ||||||||||| ||||||||||| |||||||||   ||||||  |||||||| ||||||||||    
T  7634968 ttttcttgttgtttaagcttacttgtgaactcaaaatatcatgcctttacactaaaaattatgtaatgacaa 7634897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 9403149 - 9403203
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaa 81  Q
    |||||| |||||||||||||||| || |||||| |||||||||||||||| ||||    
T  9403149 aagtctcctgagacctcttgaatcttaattcttggtcttcccaaagtcttcacaa 9403203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 2793375 - 2793339
Alignment:
Q  105 ttactgtttaagcttgcttgtgaactccaaatatcat 141  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  2793375 ttactgtttaaacttgcttgtgaactcaaaatatcat 2793339  T

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Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 95433 - 95495
Alignment:
Q  28 aagtcttctgagacctcttgaatattcattcttg-tcttcccaaagtcttgacaattcttcag 89  Q
    |||||| |||||||||||||||| |||||  ||| |||||| |||||||||||||||||||||    
T  95433 aagtctcctgagacctcttgaatcttcataattggtcttccaaaagtcttgacaattcttcag 95495  T

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Target: scaffold0555 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 6247 - 6299
Alignment:
Q  10 ataattcttccctgttgtaagtcttctgagacctcttgaatattcattcttgt 62  Q
    ||||||| |||| ||||||||||||||||| |||||||||| || ||||||||    
T  6247 ataattcctcccagttgtaagtcttctgaggcctcttgaatctttattcttgt 6299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 960 - 1024
Alignment:
Q  82 ttcttcagttttt-ctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    ||||||||||||| ||| |||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  960 ttcttcagttttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 1024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 4329 - 4384
Alignment:
Q  90 tttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  4329 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 4384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 11459 - 11514
Alignment:
Q  90 tttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  11459 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 11514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 1144 - 1081
Alignment:
Q  82 ttcttcagtttttctttcttttcttactgtttaagcttgcttgtgaactcc-aaatatcataaa 144  Q
    |||||||||||||||| ||||||||  || |||||||| ||| |||||||| ||||||||||||    
T  1144 ttcttcagtttttcttgcttttcttggtgcttaagcttccttatgaactccaaaatatcataaa 1081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 246259 - 246314
Alignment:
Q  90 tttttctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    |||||||| |||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  246259 tttttcttgcttttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 246314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0757 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 4663 - 4599
Alignment:
Q  82 ttcttcagttttt-ctttcttttcttactgtttaagcttgcttgtgaactc-caaatatcataaa 144  Q
    ||||||||||||| |||  ||||||| ||| ||||||||||||||||||||  ||||||||||||    
T  4663 ttcttcagttttttcttgattttcttgctgcttaagcttgcttgtgaactcaaaaatatcataaa 4599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Complemental strand, 61669 - 61637
Alignment:
Q  109 tgtttaagcttgcttgtgaactccaaatatcat 141  Q
    ||||||||||||||||||||||| |||||||||    
T  61669 tgtttaagcttgcttgtgaactcaaaatatcat 61637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 4633 - 4689
Alignment:
Q  27 taagtcttctgagacctcttgaatattcattctt-gtcttcccaaagtcttgacaat 82  Q
    |||||||  |||| |||||||||| |||| |||| ||||||||||||||||||||||    
T  4633 taagtctattgaggcctcttgaatcttcactctttgtcttcccaaagtcttgacaat 4689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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