View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17168_high_61 (Length: 299)
Name: NF17168_high_61
Description: NF17168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17168_high_61 |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 5000693 - 5000968
Alignment:
| Q |
1 |
cagtatccgtgtcatgtccggtgtccgtgtatgtatctgtgcttcattagttcatcctcctctttatgttcttcttcaatttcttctcatatatataaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5000693 |
cagtatccgtgtcatgtccggtgtccgtgtatgtatctgtgcttcattagttcatcctcgtctttatgttcttcttcaatttcttctcatatatataaga |
5000792 |
T |
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| Q |
101 |
ataatttatctagagtaagtttgcatctatatcatatgtcatgaaaatctggaactatatacttgggactttcactcactccactggatcatcagtatat |
200 |
Q |
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| T |
5000793 |
atgatttatctagagtaagtttgcatctatatcatatgtcatgaaaatctggaactatatacttgggactttcactcactccactggatc--------at |
5000884 |
T |
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| Q |
201 |
acttggtacctagaatttaagttgctgaactaaagttgttatgtagttttttcgctattgctggtgcattcaactctagcaact |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5000885 |
acttggtacctagaatttaagttgctgaactaaagttgttatggagttttttcgctattgctggtgcattcaactctagcaact |
5000968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 5970174 - 5970215
Alignment:
| Q |
6 |
tccgtgtcatgtccggtgtccgtgtatgtatctgtgcttcat |
47 |
Q |
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| T |
5970174 |
tccgtgtcatgtccggtgtccgtgtccgtatctgtgcttcat |
5970215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 3308 - 3262
Alignment:
| Q |
1 |
cagtatccgtgtcatgtccggtgtccgtgtatgtatctgtgcttcat |
47 |
Q |
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| T |
3308 |
cagtatccgtgtcgtgtccggtgtccgtgtctatatccgtgcttcat |
3262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 43737885 - 43737926
Alignment:
| Q |
6 |
tccgtgtcatgtccggtgtccgtgtatgtatctgtgcttcat |
47 |
Q |
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| T |
43737885 |
tccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcat |
43737926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 23293058 - 23293099
Alignment:
| Q |
6 |
tccgtgtcatgtccggtgtccgtgtatgtatctgtgcttcat |
47 |
Q |
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| T |
23293058 |
tccgtgtcgtgtccggtgtccgtgtccgtatctgtgcttcat |
23293099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 3164097 - 3164138
Alignment:
| Q |
6 |
tccgtgtcatgtccggtgtccgtgtatgtatctgtgcttcat |
47 |
Q |
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| T |
3164097 |
tccgtgtcgtgtccggtgtccgtgtctgtatccgtgcttcat |
3164138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 18631471 - 18631512
Alignment:
| Q |
6 |
tccgtgtcatgtccggtgtccgtgtatgtatctgtgcttcat |
47 |
Q |
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| T |
18631471 |
tccgtgtcgtgtccggtgtccgtgttcgtatctgtgcttcat |
18631512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 1885563 - 1885519
Alignment:
| Q |
3 |
gtatccgtgtcatgtccggtgtccgtgtatgtatctgtgcttcat |
47 |
Q |
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| T |
1885563 |
gtatcagtgtcgtgtccggtgtccgtgtctgtatccgtgcttcat |
1885519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 17851421 - 17851377
Alignment:
| Q |
3 |
gtatccgtgtcatgtccggtgtccgtgtatgtatctgtgcttcat |
47 |
Q |
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| T |
17851421 |
gtatccatgtcgtgtccggtgtccgtgtctgtatccgtgcttcat |
17851377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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